Sful007141.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540813.1:1780746-1782186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00014 0.0073 16.8 2.3 2 23 122 143 121 143 0.97 2 10 2.9 1.6e+02 3.2 0.1 7 23 156 172 156 172 0.90 3 10 2.5e-06 0.00014 22.3 2.6 2 23 179 200 178 200 0.95 4 10 0.0019 0.1 13.2 6.9 1 23 207 230 207 230 0.95 5 10 0.28 15 6.4 1.1 1 23 238 258 238 258 0.81 6 10 1.7e-06 9.3e-05 22.8 2.1 2 23 265 287 264 287 0.96 7 10 0.0012 0.062 13.9 0.8 3 23 298 318 297 318 0.98 8 10 0.057 3.1 8.6 6.7 1 23 324 346 324 346 0.96 9 10 0.00076 0.041 14.5 4.6 1 23 352 374 352 374 0.96 10 10 1.3e-06 6.9e-05 23.2 0.6 1 23 380 402 380 402 0.98
Sequence Information
- Coding Sequence
- ATGACTGATATAGACGAATCTAAATTTTCTGCACTCTGTCGAATTTGTTTATTGAATAAAGAGCTTTCTTTCATTTCATTAGATGTTTTAAAAAGCATAGAGGAGTGTATCAATGTACAGatatcATTGGACGATGGATTACCCAATTCAATTTGTCATGATTGTAAAGAATTTATTgacaaaatattactttttaaacGCATGTGCCAGaactcaaataaaattttatacgatattattaaaaataaacgctGTGATAAAGTACAAATAGAAAATAGTGAAAatgtatcaataaataataaggcTGATAGAAATCAAACATCAACGAATCTAAGAACAAATAGAATATTAAGtaataaattaacatgcCAAAACTGCAACAAGAAATTTTTAAACGCCAGTACGTTATCAAAACATATGCAAAAGCACGAAATCTTAAAACAAGAAGATcctgaaacaaaacacgataaATCTTTCCAAAGTGTTCTGCAGTTACAAAAACACCAAGGAATACACGCACCTTCTTTACCTTGTGTCTGCACAACTTGTGGAAAGAGTTTTATTTCTAAAAGTAAACTACGAAGGCATGAACTCATACACAGTACAAGACTGCGTATCCACGCCTGCTCTCATTGCGATAAGGCATTTCACGATAAAGATACATTACGAGGCCACGTAAGACTGTGCCACGCCACTGAACCCAGAACACGGTATGTGTGCCCTATTTGTGGCGTGTCCGTCATAGACCTTCGCTCACACACCCGCCGACGCCACAGCTCTAACCAAAGACTCAAATGCGAGATCTGTTCTACCACATTTCGGTCAAACAGCGACTTAACTCGCCACACCCGCAACAAGCACTCTAACAATCCGACGACACTCCGTGCTCTGTGTTCTACGTGCGGCAAGCCGTGCGCGTCTCTCGCAGAGCTGAGGCAACACTCGCTGACGCACACGGGGGCAAAGCCGCACGCGTGCCACTTGTGCGACAAGCGCTACACGGCAGCAAAGACTCTGCGGTGCCACCTGAGGACCCATTCGGGCGATAAGCCGTTCGCCTGTACAGTTTGCGATAGGAGGTTCCATAACAGCCAGGTGCTCAAGCATCATACGAGGATACACAGTGGGGTGCGCCCATTCGTATGCCAGTTGTGTGGAAAAACTTTTGCACAAAGTGCTGCACTTTATAATCATAAAAAGACGCATtga
- Protein Sequence
- MTDIDESKFSALCRICLLNKELSFISLDVLKSIEECINVQISLDDGLPNSICHDCKEFIDKILLFKRMCQNSNKILYDIIKNKRCDKVQIENSENVSINNKADRNQTSTNLRTNRILSNKLTCQNCNKKFLNASTLSKHMQKHEILKQEDPETKHDKSFQSVLQLQKHQGIHAPSLPCVCTTCGKSFISKSKLRRHELIHSTRLRIHACSHCDKAFHDKDTLRGHVRLCHATEPRTRYVCPICGVSVIDLRSHTRRRHSSNQRLKCEICSTTFRSNSDLTRHTRNKHSNNPTTLRALCSTCGKPCASLAELRQHSLTHTGAKPHACHLCDKRYTAAKTLRCHLRTHSGDKPFACTVCDRRFHNSQVLKHHTRIHSGVRPFVCQLCGKTFAQSAALYNHKKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344389;
- 90% Identity
- iTF_01344389;
- 80% Identity
- -