Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540810.1:28404215-28406182[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.12 6.6 7.5 0.6 3 23 323 342 322 342 0.78

2 12 3.2e-05 0.0017 18.8 5.3 1 23 348 370 348 370 0.99

3 12 0.007 0.38 11.5 1.0 1 23 376 398 376 398 0.95

4 12 0.025 1.4 9.7 2.7 2 23 405 426 405 426 0.97

5 12 0.00085 0.046 14.3 1.3 1 21 432 450 432 451 0.87

6 12 0.0011 0.06 14.0 0.7 1 23 458 481 458 481 0.94

7 12 0.0066 0.36 11.5 0.6 1 23 487 509 487 509 0.99

8 12 0.00049 0.026 15.1 3.0 1 23 515 537 515 537 0.98

9 12 4.5e-07 2.4e-05 24.6 1.2 1 23 543 565 543 565 0.98

10 12 2.2e-05 0.0012 19.4 1.6 1 23 571 593 571 593 0.95

11 12 2.2 1.2e+02 3.6 2.3 2 23 601 620 600 620 0.86

12 12 2.3e-05 0.0013 19.2 1.4 1 23 626 649 626 649 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.12	6.6	7.5	0.6	3	23	323	342	322	342	0.78
2	12	3.2e-05	0.0017	18.8	5.3	1	23	348	370	348	370	0.99
3	12	0.007	0.38	11.5	1.0	1	23	376	398	376	398	0.95
4	12	0.025	1.4	9.7	2.7	2	23	405	426	405	426	0.97
5	12	0.00085	0.046	14.3	1.3	1	21	432	450	432	451	0.87
6	12	0.0011	0.06	14.0	0.7	1	23	458	481	458	481	0.94
7	12	0.0066	0.36	11.5	0.6	1	23	487	509	487	509	0.99
8	12	0.00049	0.026	15.1	3.0	1	23	515	537	515	537	0.98
9	12	4.5e-07	2.4e-05	24.6	1.2	1	23	543	565	543	565	0.98
10	12	2.2e-05	0.0012	19.4	1.6	1	23	571	593	571	593	0.95
11	12	2.2	1.2e+02	3.6	2.3	2	23	601	620	600	620	0.86
12	12	2.3e-05	0.0013	19.2	1.4	1	23	626	649	626	649	0.97

Sequence Information

Coding Sequence: ATGTTCAACTCCCAGCCAATATACACAAATCAAAGTTGTTACCCAACTGCACCATCATTAGATGTTCCTCCCACAGACAAAAGTTGTAACGATACATCACACACTTGCTGCGGGACGCAGTTAGACAACAGTTACCGTAATGTAGAACCATGGCTATATGGTTCTAGTTACAATACTAAAAAATACAACGATTTTCCTTCTTGTCAAAAACAAAGTATGCCGCAGATGCCTGTGTTTAATAAGTATTTAGTcgataattataatacaaataattttaatccaTGTACAGAAGATAGAAACTATCAGAAAACTTATTCAAGCTGTCGAGTAATAAATGATTGCGATGGATTACAGAATATATGCAATAATGATATGTTCAATGATATTTCGTATGTTGATTTGTATAAACTACCAAAAATCAGTTCAAAAACTACAAGTTGTGCTGAGAGTGATATAATTGTTGAAGAATCTGGCGATGATTCTTCAGATATTGATTGCGAACTCACACTGGCATGTATtatatgtcaaaaatcatcaacAACAGAAAGATtatcatattttcaaatttctgCATTGAAAACAAACACTTCGCAGATCCCGATAATGGAAAAGTTAATTCAAgttactaaaattaattttccgaATTCAAAAGACgatcatatatgtattttatgtttgaATCTTATCAATGTAATTGACTCTTTAGAATCCGAATTAACTGAAATGAGAAAAAAGTTGTGTAATATGTGCCAAAAGCCTTGTGATATATCTTGTAATGATAATGTAACTTCAAATGAAAGTATCACTTGCTTTgataaagaaaatgtaaaacaaaatgaaagtgTTATCGATCATTTCACAGTTaaagaaaatatcgaaaataaaataacagaaaaagatacagtaaataattcatatctttCTGATACACTAAATGATGAAAATGTAAAGCAAAAAGATCGTATTTGTAAAATATGCAATAAATACTTCTCCCAAGCAGATATAGATAAACACAAGCAACTTCATGCTGatcaaataaatttcaaatgtaCAATCTGTCACAGAAGTTTTACGATGAAACGGTTATTGGATAATCACATGAAAAAACATAATGGTCAGAAAGATTTCCTTTGTGATCGCTGTGGCCAGACATATCTCAAACGCTACAGTTTAGAAATACATTTACGTAGACACAACAAGCTTTATAGAGCATACTGCAAACTGTGTAAAAAAGGTTTTGTATGTGTATCATCATTAAAGGCTCATCAACAGTCTCACATTGACATAAAACCTTTCACTTGTAAATATTGCAATAAAAGTTTCAAGACAAATCTGAATGAACATATAAAAGTATGTTCAGGTGATTTACCATTTTCTTGTGATAAATGCAGTAAGAAATTTGTtagcataaataaattaaacaatcaTGTATTGTTGATACatgagaaaaattataaatttcaatgtGAAACATGTATGAAAGGATATATTAAAGAATCAGAATATAAAGTTCATTTATTAACGCATTcggataaaaaattattcaattgtGATATCTGCAATAGTTCATATAAAACAATTGGTAATCTTAACCATCATAAGAAGACCCATCAACAATCTTTACCTTACAACTGTGAAGATTGCGGTAAAGGATTTAAAAGAAAAGAGAATTTTGAGgctcataaaaataaacatattgggTTTACACCGTTTTTgtgtaatatatgtaataaaaaatttgcaGCACAAAAACATCTGAAtgcacatttaaaaatacataatcgAACTACAGAGAAGAAATCATGCACAATTTGTGGAAAACAATTAGTTCACAGTCTTGAGGAACATATGAAATTACATTCAGGTACTAGACCTTTCCAATGTGATAAATGTTCAGCAAATTTTATTACCAAAAGTGCATTAAAGAAACATCTACTTCGAAAACATAATTCAATTCATGctttatag
Protein Sequence: MFNSQPIYTNQSCYPTAPSLDVPPTDKSCNDTSHTCCGTQLDNSYRNVEPWLYGSSYNTKKYNDFPSCQKQSMPQMPVFNKYLVDNYNTNNFNPCTEDRNYQKTYSSCRVINDCDGLQNICNNDMFNDISYVDLYKLPKISSKTTSCAESDIIVEESGDDSSDIDCELTLACIICQKSSTTERLSYFQISALKTNTSQIPIMEKLIQVTKINFPNSKDDHICILCLNLINVIDSLESELTEMRKKLCNMCQKPCDISCNDNVTSNESITCFDKENVKQNESVIDHFTVKENIENKITEKDTVNNSYLSDTLNDENVKQKDRICKICNKYFSQADIDKHKQLHADQINFKCTICHRSFTMKRLLDNHMKKHNGQKDFLCDRCGQTYLKRYSLEIHLRRHNKLYRAYCKLCKKGFVCVSSLKAHQQSHIDIKPFTCKYCNKSFKTNLNEHIKVCSGDLPFSCDKCSKKFVSINKLNNHVLLIHEKNYKFQCETCMKGYIKESEYKVHLLTHSDKKLFNCDICNSSYKTIGNLNHHKKTHQQSLPYNCEDCGKGFKRKENFEAHKNKHIGFTPFLCNICNKKFAAQKHLNAHLKIHNRTTEKKSCTICGKQLVHSLEEHMKLHSGTRPFQCDKCSANFITKSALKKHLLRKHNSIHAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344393;
90% Identity: iTF_01344393;
80% Identity: -