Basic Information

Insect: Sialis fuliginosa
Gene Symbol: RABGAP1
Assembly: GCA_961205875.1
Location: OY540810.1:11367475-11391371[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00021 0.011 16.2 2.4 2 23 1165 1186 1164 1186 0.97

2 12 0.00036 0.019 15.5 3.0 1 23 1192 1214 1192 1214 0.98

3 12 0.0013 0.068 13.8 5.4 1 23 1220 1242 1220 1242 0.98

4 12 7e-05 0.0038 17.8 2.8 1 23 1248 1270 1248 1270 0.98

5 12 0.00022 0.012 16.2 1.6 1 23 1276 1298 1276 1298 0.98

6 12 0.00017 0.0092 16.5 1.4 1 23 1304 1326 1304 1326 0.98

7 12 0.0026 0.14 12.8 1.2 1 23 1332 1354 1332 1354 0.98

8 12 0.00055 0.03 14.9 1.0 1 23 1360 1382 1360 1382 0.98

9 12 0.00048 0.026 15.1 2.9 1 23 1388 1410 1388 1410 0.97

10 12 0.022 1.2 9.9 1.1 1 23 1416 1438 1416 1438 0.99

11 12 0.00064 0.035 14.7 1.8 1 23 1444 1466 1444 1466 0.98

12 12 0.0043 0.23 12.1 8.5 1 23 1472 1494 1472 1494 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00021	0.011	16.2	2.4	2	23	1165	1186	1164	1186	0.97
2	12	0.00036	0.019	15.5	3.0	1	23	1192	1214	1192	1214	0.98
3	12	0.0013	0.068	13.8	5.4	1	23	1220	1242	1220	1242	0.98
4	12	7e-05	0.0038	17.8	2.8	1	23	1248	1270	1248	1270	0.98
5	12	0.00022	0.012	16.2	1.6	1	23	1276	1298	1276	1298	0.98
6	12	0.00017	0.0092	16.5	1.4	1	23	1304	1326	1304	1326	0.98
7	12	0.0026	0.14	12.8	1.2	1	23	1332	1354	1332	1354	0.98
8	12	0.00055	0.03	14.9	1.0	1	23	1360	1382	1360	1382	0.98
9	12	0.00048	0.026	15.1	2.9	1	23	1388	1410	1388	1410	0.97
10	12	0.022	1.2	9.9	1.1	1	23	1416	1438	1416	1438	0.99
11	12	0.00064	0.035	14.7	1.8	1	23	1444	1466	1444	1466	0.98
12	12	0.0043	0.23	12.1	8.5	1	23	1472	1494	1472	1494	0.98

Sequence Information

Coding Sequence: ATGGAGGATAGTTTAAGTGTTAAATCAAATGATTCAGTAACGACAAGTGACGAATTTGATTTTATCTGCGATAAACCAAGTTCTAGTAAAACACCAACGTTAGATATAACAAGTGGTGATTTAGGCGATTTGAAAAAAGCACTCGACGAAGTTCTCAAAGAAAACGACCCATTTGTAATGGAGTCACCAGTAGAGCCGGCGATAGATAATAGTGCAATGGTAGAAAATGAAGATACTAAAAATGATGCTGACACTGAACAAAGCTCAGAAAAAACAGATAAAATATCACCAGCTATTGAGAAGCAAGATGAAATGAAACCAGTTCGAAGTGATGAAAGCGAAGAAGAAGtatcTGACATCGATCAAGAATGTACCATATTTAGTGGAGTGACATATCTAGGTGCTGCAGCAATAAATGCACCAAAATCTGAAGCGGAGATTCAACGAAACATGACTATATTAAATGAACAGAGTTCAGAATCAGGAATTAAAGTATCCGTGTCCGTACCGAGCTATTCAACTGGTGTAGTAGTaCTATACGATGCTACGACACATTCAGTTATTGCACGCTATGAAATCCATCGTATTCTATTCTACGCTCGTGGAGTAGCCGACGGACCCGAAGGCAGCTGCTTTGCTTTCACTTGGTCTCACGGTGACACCCAGGAGTCGGCCATTTTTCAGTGCCATGTGTTCCGGTGTAATATTACAGAAGCGGTCGCACAAGTTTCAGGTTGTTTTGCAAAGGCATTTCAACGAGCCCCAAAGTCAATGACAAGTTCGATTGCATCGGCTACAGATATGTCTAGTTCTGTCTGCACTTTACCTGATCAACACCCACGTACTCTTGTCTGTGTGTTTGAACTCGCTTTAGAAATTAAAGAAGATGACGGAAAAGGTTCATTTGCCGACGTATGCAAAGACAGAACTGGTTTCAAGCTTCGTACTAACGTGGTAAAGCAGATTTGGTTAACAATGCATCAAGTAACAGACAGGGCCCCTCGTCTACACATTGAACGTTGTTTTGGAGTTCTAGCAGCTCCCGGAAAACACGTTAAGCATTCAGACATGCAGTTACTTGAAATGGTATCGATAGGACCTTCAAATGCAGGCGATACAAACAGTTACGTTATTTCTGGTCATTGGGATCCGTCCGAACATGTTTTTGCACCACTTAATACAGAAACACCGAAAGAAATACAGCAGTATTTAACCGTCGCTGCGGATCTAGTCATAAGGGGCATTTCGGAACCTGTGAGGTTCTTAGTCGAAACACCAGTGAAGATCTTTCCTCAAAATGAAAGGTTTTGGTATTTCTCAAAAAGGTTTTTAGTTCAACAATTTTTCTTAAATCTAAAggaaACGTATTCAGTGGAAAGTGGAGATTTATCGTATGAAGTACAAAGTCTGGAAACATCAGGAGAACTTGACAGAAATCGGTTAAATCTTTCATTGAATTTAACTAGTTTAATGAGAACACCTAGTTTGAATTCTATTGAAACACTTACACCGAAAGAAGATTACTTATCAGACGGAGATGAGCCATTGCTTAGTGGTACGGGGTGTGTGTCGAAGGATTGTCCAGAAGCTGTGTTGGAAAGCTGGGCTGAAGTCTTGCTCCAATGGGAATCAAGCGACTGTCGTCCAAAAGGACTGACACCACTTGTACGTCACGGTGTTCCTGAAGCCCTGCGAGGGGAAGTGTGGTTGAGGTTGGCACAAGCTGACCATGATCAAGAAATGATGGATAGGTACAGGATACTGATTACCAAGgaAAGTAGCTGTGAAAATGTTATTCAGCGAGACATTAACAGAACATTCCCTGCTCATGATTTCTTTAAAGAAGCTGGAGGTCTGGGGCAAGATTCTTTATACAGAATCAGTAAAGCTTATGCTGTTCATGATGCAGAAGTAGGATATTGTCAGGGGCTGAGTTTTTTGGCGGCAACGTTACTTTTACacATGCCAGAAGAACAGGCATTTTGCGTTTTAGTCAAACTGATGTATGAATACGGACTACGAGATTTATATAAAGAcggatttgaaaatttatatatgaGGTTATATCAGTTAAATAGTTTAATGAAgGAACAATTGTTACCTTTATGGCAACATTTTGAGCTTTATAAGGTCGAGACACACATGTATGCTTCGCAGTGGTTTCTGACATTGTTTACCGCAAGATTTccattatattttgtatttcataTTCTCGATGTTGTTCTACTTCAAGGAATTGATACGCTGTTCCAAGTTGCTTTAGCTCTACTCACTatgtGTAAGAAAGATTTGCTTCAGTTGGATTTTGAaggaattttgaaatatttccgCGTTTCTTTACCACGGAGGTGTCGTAATGAAGAAGTCGCACGCAACATTATGAAGTTAGCATGCAGTATTAAagtgaaaaaactgaaaaagtATGAACAGGAATTTATTATCCGTAAAGAAGAACAAGATGCTACGTATAATTACTCGACAGAGTTAGCGAGGTTAAAAGAAAACGCTCTCAAAGAAGAAGATCAAAGAAAGGTGATAGCAGAAGAAGTATCGCAACTGCGAATGTCATTGAGGGAAGCCGCGGTGAGACATGAAACAGAATCGGCGAGAAATGCTACTATAATAATGGAGTATAaacaaatatgtaaacgtttagATGAGCAAAATTCTCAAACTAAAACGACGTTAGCTGAACTCAGggAGAAAATAAAAGGTTGCGAACGATGTAAGTCTGCTGTTAACAGTACAGTAAGTTCGCCGGGAACGCAGAACGTTATCGATCATCCGTTAGCGATTAAAAGAGAAGCGCATCAAATGACCGATGAGCTAGCGAGAGCATTGGAAAGAATACGGGAACTGGAGCTAGAACTAGCCCAAACTAAGTTGGCTCACGTTGAAGCAGAATGTAGGAATCAGGACGTAACACATCAGTTAAATTCAGCGATGTCTGAACTACAGACAGCTAAAAATACATGGCCACCGTGGCTAAGTAAGACCCttagttctatcaaagaatacaAAAAAGATATACCATTTCCGTACAGTTCAAATCAAAGTACCTCAATACCGAATACGGGAGCAACGTTTATTTCTCACATTAACTTCCGGCGTGAAAGTGCACCGCATCGGAACGATACGGTTGTTAATGATTCAAGAAGAGATTCGGCTCCTGTTTTAAAAGATTCTCAGAGTTACACTAGTTTTAGAAcggaaacattgaatattaaaaatgaaaatcacACTGATGATGAAGACACAACCAGACAAATAGAAAGTCAATATCATCAAGAAGAAATATCAGTTAACAAAAAACAGCAATATGAATGTAACAGTGAAAATACAAAAGATTATCAAGTAAATGGAATTAAAACAgaaacattgtatattaaaaatgaaaatcacACTGACGATGAAGACACATATGACTATAGCACAAACAGTAAGAATCGTTTAGGAAGACATCAGTCAAAACATACTGGTGATCAACTTTTGAAATGTGAACATTGTGAATACAGCACAGCTAGAAAGGATGGTTTGAAAAGACATCAGTTAAAACATACCGGTGAACTAACTTTCAAATGTGAACAGTGTGAATATAGCACATGTAGAAAAGacggtttaaaaaaacatttattaatacatactggcaatcgaccttttaaatgtgaacaGTGTGAATACAGCACATGTAGAAAGAGTACTTTAAAATTACATCAGTTAAAACATACTGGTGAACAACCTTTCAAATGTGAACATTGTGAATACAGCACAAATAGAAAGAGTAGTTTAAAAATACATCAGATAATACATACCGGTGAACTACCTTTCAAATGTGAACAGTGTGAATACAGCGCACGTAGAAAAAGTGAATTAAAATTACATCAGTTGAAACATTCCAGTGAActaccttttaaatgtgaacaGTGTGAGTACAGCACAGGTAATAagagtaatttaaaattacatcagATAAAACATACCAATGAACTACCTTTCAAATGTGAACAGTGTGAATTCAGTGCACGTAGAAAGGTGGAATTAAAATTACATCAGTTAAAACATACCGGTGAACTACCTTTCAAATGTGAGCAGTGTGAGTATAGCGCACGTAGAAAGGCTGAATTAAAATTACATCAGTTAAAACATACTGGCAatcgaccttttaaatgtgaacaGTGTGAATACAGCACAGATAGAAAAAGTAGTTTAAAAAGACATAAGTTACAACATACCGGGGAACTACCTTATAAATGTGAACAGTGTGAATACAGCACAGGTATAAaaggaaattttaaattacatcagTTAAAACATACTGGTGAACTACCTTTCAAATGTGAACATTGTGAATACAGCACAGGTAGAAAGGGTGAGttaaaaatacatcaattaAATCATACCGGTGAAGTAACATTCAAATGTGAACAGTGTGATTACAGCTCATGTAGAAAGAGTGATTTTAAAAGACATCATTTAAAACATACCGATAAACTACCTTTTTATCTGAACAATGTGAATACAGcacagGGCTATAATAATGTTCCACAGTTTACCAGTAATTTTGTTGCCAAGTCTATTCAagataatgaatatttattggTGTTACCAGATGATAATACCTTCCTTTCCCTTACAACTTACCCGTTTCATCTTCAACCAGAACTGTCAAGTGAATTTCCAGTGTCATCTATGTGA
Protein Sequence: MEDSLSVKSNDSVTTSDEFDFICDKPSSSKTPTLDITSGDLGDLKKALDEVLKENDPFVMESPVEPAIDNSAMVENEDTKNDADTEQSSEKTDKISPAIEKQDEMKPVRSDESEEEVSDIDQECTIFSGVTYLGAAAINAPKSEAEIQRNMTILNEQSSESGIKVSVSVPSYSTGVVVLYDATTHSVIARYEIHRILFYARGVADGPEGSCFAFTWSHGDTQESAIFQCHVFRCNITEAVAQVSGCFAKAFQRAPKSMTSSIASATDMSSSVCTLPDQHPRTLVCVFELALEIKEDDGKGSFADVCKDRTGFKLRTNVVKQIWLTMHQVTDRAPRLHIERCFGVLAAPGKHVKHSDMQLLEMVSIGPSNAGDTNSYVISGHWDPSEHVFAPLNTETPKEIQQYLTVAADLVIRGISEPVRFLVETPVKIFPQNERFWYFSKRFLVQQFFLNLKETYSVESGDLSYEVQSLETSGELDRNRLNLSLNLTSLMRTPSLNSIETLTPKEDYLSDGDEPLLSGTGCVSKDCPEAVLESWAEVLLQWESSDCRPKGLTPLVRHGVPEALRGEVWLRLAQADHDQEMMDRYRILITKESSCENVIQRDINRTFPAHDFFKEAGGLGQDSLYRISKAYAVHDAEVGYCQGLSFLAATLLLHMPEEQAFCVLVKLMYEYGLRDLYKDGFENLYMRLYQLNSLMKEQLLPLWQHFELYKVETHMYASQWFLTLFTARFPLYFVFHILDVVLLQGIDTLFQVALALLTMCKKDLLQLDFEGILKYFRVSLPRRCRNEEVARNIMKLACSIKVKKLKKYEQEFIIRKEEQDATYNYSTELARLKENALKEEDQRKVIAEEVSQLRMSLREAAVRHETESARNATIIMEYKQICKRLDEQNSQTKTTLAELREKIKGCERCKSAVNSTVSSPGTQNVIDHPLAIKREAHQMTDELARALERIRELELELAQTKLAHVEAECRNQDVTHQLNSAMSELQTAKNTWPPWLSKTLSSIKEYKKDIPFPYSSNQSTSIPNTGATFISHINFRRESAPHRNDTVVNDSRRDSAPVLKDSQSYTSFRTETLNIKNENHTDDEDTTRQIESQYHQEEISVNKKQQYECNSENTKDYQVNGIKTETLYIKNENHTDDEDTYDYSTNSKNRLGRHQSKHTGDQLLKCEHCEYSTARKDGLKRHQLKHTGELTFKCEQCEYSTCRKDGLKKHLLIHTGNRPFKCEQCEYSTCRKSTLKLHQLKHTGEQPFKCEHCEYSTNRKSSLKIHQIIHTGELPFKCEQCEYSARRKSELKLHQLKHSSELPFKCEQCEYSTGNKSNLKLHQIKHTNELPFKCEQCEFSARRKVELKLHQLKHTGELPFKCEQCEYSARRKAELKLHQLKHTGNRPFKCEQCEYSTDRKSSLKRHKLQHTGELPYKCEQCEYSTGIKGNFKLHQLKHTGELPFKCEHCEYSTGRKGELKIHQLNHTGEVTFKCEQCDYSSCRKSDFKRHHLKHTDKLPFYLNNVNTAQGYNNVPQFTSNFVAKSIQDNEYLLVLPDDNTFLSLTTYPFHLQPELSSEFPVSSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -