Sful003386.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540810.1:31812849-31814546[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0041 0.22 12.2 1.7 1 21 81 101 81 105 0.90 2 10 0.007 0.38 11.5 3.0 3 23 126 147 124 147 0.95 3 10 0.00022 0.012 16.2 2.6 1 23 220 243 220 243 0.93 4 10 0.0011 0.062 13.9 1.8 1 23 278 300 278 300 0.98 5 10 1.7e-06 9e-05 22.9 2.6 1 23 306 329 306 329 0.95 6 10 2.4e-05 0.0013 19.2 1.0 1 23 335 357 335 357 0.98 7 10 4.3e-05 0.0023 18.4 2.2 1 23 363 385 363 385 0.94 8 10 5.4e-05 0.0029 18.1 0.2 1 19 391 409 391 410 0.97 9 10 1.2e-05 0.00066 20.1 2.7 1 23 419 441 419 441 0.98 10 10 1.2e-05 0.00063 20.2 0.7 3 23 449 469 448 469 0.98
Sequence Information
- Coding Sequence
- ATGATTTCACAGACAAAAACAAaagTGTGTCGATATGAAAGTTATAGGTTATGCCTTAAAGGCATTCGTTTATTTTTCAGATGGAACGTGGTCGATTTCAAAACATATATGTCAACTGTCAAATCTCAACAGACAACACTTTTATTAAACTCATCTGAGTCAAGGTTGGTGAAAAATGAGTCTGCTGATGAATCTGGTGATGAAGACGATATACCTCTTAGTAAAagattagtaaaaaaatttaaatgtgcaacatgtaaagaaatatttaaaactgaAAAGAAATTACAACAACATGGACTTCGTACTAAACATATTGTACGTTCTGATACAAGAATACGACGGAAacaatctgaaataaaatacagaatATTTTGTGACATCTGCGGGTCTGGATTTACACGTAACTGCGATATGGTCAAACATAGACGGCATGTACATGCAGACTTACAGAGCTCAGGTAGACGTTCTGTTGATGTTAAATCAGAACCCGATGATTCAGAATCATTATCATGTACAATAGATCCAAATGTAGTACTGATGGATACACTCAGGTCTTCAGTAATGCAAACACCAGAAGTAAAACGAGAAGTCGTACCTTTAGTTTTATCACAATCACCTATCAAACGaagaaaaaaatcagaaatagTTCCGACACATTTTTGTGATTTATGTCCGAAAGGTTTTACAAGACGATATGACATGCGTAAACATCGGTTACAAGTACACGGAGATGTACCAAATGAAACAGAAGATATGCGTAAAACAAAAGCTCAAAAAAATCTGGAGTTATTAGAACGTTGTAAAATTGAATTTGAAGGTCGCACGCACTACAAATGTGAAATATGTGATCGTATTGTACATATGTCTTATAATTTTCTGCGACACCAGACTGTACACACAGGGGTCCGCGCATTCTTCTGTCATCTCTGTGGGAAGAGTTTTCGTATGTCGAGCGGTCTCAATCGTCATATCAAAGAGTCTCATTTCGGAGTGAAGAAGTTCCCTTGCGATGAATGTGGTCGATGTTTTGCTTCAAAGAGTACCAGAGATGATCACATGAACATCCACTGGGGCCTACGTCCATTTGTGTGTGACACTTGTGGTAAAGCATTCAAGTCTAAAGCCTCTTTACATGTCCATAAGACATTTCATACAGACGACAAACCATTTGTATGTGCGACGTGTGGGAAACGCTTCAGACGTAACCAGGAACTCAAAGTGCACGGATGGTTGCATACAGGATACAAACCTTATGCTTGTCCTACCTGTGGTAGTTGTTTTCGTTTATCTCAGGATCTCAAACGGCACCAAAAGACTCATGAGAAAGGAAACGAAGTCGCTTGCGAGGAGTGTGGAAATACATTTAGTCAATTGCGTTATCTCCGTAATCACCTGAAAACACATCGGAAAGCCGAAATGAAGCTTGCCGCTGCAGTCGCGGCCGGCGTTATCGATAATGGTCTACATTTACAACAGTTGACCTGA
- Protein Sequence
- MISQTKTKVCRYESYRLCLKGIRLFFRWNVVDFKTYMSTVKSQQTTLLLNSSESRLVKNESADESGDEDDIPLSKRLVKKFKCATCKEIFKTEKKLQQHGLRTKHIVRSDTRIRRKQSEIKYRIFCDICGSGFTRNCDMVKHRRHVHADLQSSGRRSVDVKSEPDDSESLSCTIDPNVVLMDTLRSSVMQTPEVKREVVPLVLSQSPIKRRKKSEIVPTHFCDLCPKGFTRRYDMRKHRLQVHGDVPNETEDMRKTKAQKNLELLERCKIEFEGRTHYKCEICDRIVHMSYNFLRHQTVHTGVRAFFCHLCGKSFRMSSGLNRHIKESHFGVKKFPCDECGRCFASKSTRDDHMNIHWGLRPFVCDTCGKAFKSKASLHVHKTFHTDDKPFVCATCGKRFRRNQELKVHGWLHTGYKPYACPTCGSCFRLSQDLKRHQKTHEKGNEVACEECGNTFSQLRYLRNHLKTHRKAEMKLAAAVAAGVIDNGLHLQQLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -