Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540814.1:23585113-23588112[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00028 0.015 15.9 1.0 2 23 154 175 153 175 0.94

2 13 4.9e-05 0.0027 18.2 2.3 1 23 181 203 181 203 0.97

3 13 6.4e-05 0.0034 17.9 0.9 2 23 222 243 221 243 0.96

4 13 0.0004 0.021 15.4 2.3 1 23 250 272 250 272 0.98

5 13 0.00012 0.0067 17.0 1.6 2 23 281 303 280 303 0.96

6 13 0.0056 0.3 11.8 2.4 3 21 327 344 326 346 0.92

7 13 0.00065 0.035 14.7 1.1 1 23 352 374 352 374 0.96

8 13 1.5e-05 0.00081 19.8 0.5 2 23 383 405 382 405 0.97

9 13 1.2 63 4.5 0.2 2 23 413 433 412 433 0.73

10 13 0.0016 0.083 13.5 2.5 2 23 443 465 442 465 0.96

11 13 0.00017 0.0089 16.6 1.9 3 23 476 496 475 496 0.98

12 13 2.1e-05 0.0011 19.4 3.1 1 23 502 524 502 524 0.98

13 13 0.0047 0.25 12.0 2.7 1 23 530 552 530 552 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00028	0.015	15.9	1.0	2	23	154	175	153	175	0.94
2	13	4.9e-05	0.0027	18.2	2.3	1	23	181	203	181	203	0.97
3	13	6.4e-05	0.0034	17.9	0.9	2	23	222	243	221	243	0.96
4	13	0.0004	0.021	15.4	2.3	1	23	250	272	250	272	0.98
5	13	0.00012	0.0067	17.0	1.6	2	23	281	303	280	303	0.96
6	13	0.0056	0.3	11.8	2.4	3	21	327	344	326	346	0.92
7	13	0.00065	0.035	14.7	1.1	1	23	352	374	352	374	0.96
8	13	1.5e-05	0.00081	19.8	0.5	2	23	383	405	382	405	0.97
9	13	1.2	63	4.5	0.2	2	23	413	433	412	433	0.73
10	13	0.0016	0.083	13.5	2.5	2	23	443	465	442	465	0.96
11	13	0.00017	0.0089	16.6	1.9	3	23	476	496	475	496	0.98
12	13	2.1e-05	0.0011	19.4	3.1	1	23	502	524	502	524	0.98
13	13	0.0047	0.25	12.0	2.7	1	23	530	552	530	552	0.96

Sequence Information

Coding Sequence: ATGGACTATGAAATGGATTCAGAGATGGCGAAACTAGCGTTACAATCGACTCGGCAACATGGTAATCTATGCAGTTTGAATCTCTCCAATAACGataaaataaacgTAGCCCATTCTTTTAAAATACTATGTGAAGAATCTGAACATATCTTAAAGGAAATACTAAGAACTCAACAGTTCAATCCTTTTGAAGAACATGTATCTAAATTAAACAATCAAAATGAAACTGAAGAAGTTGTAAAACTTGAAGAAATTGTAAACGAtgatgttaaaattgaaatgatAAGAAATGATGATTCAATCGACAATTCAGattatttatgtaatatggaAGTAAAAGATGAACTGAGTAATTCAAATGAAGAGACAGTTTTAAAATCGGAACCAGTACAAATCCGTCGAGTCAGAGAACGAAAACTACGAAATAGAAAGGTAGATAGCTTTGATCTATTGGCTCTGTCATGCAAATACTGTAACAGAGGGTTCAGGAGCCAGCGCGTTTTGCAGAAACATGTTGACTTGCACATCAAACAGAAAAAACATCAGTGCCAAGTGTGCAAGAAGTCATTCATCAAGAAATCAGAGCTAGTCAGTCATTCAAATGttcataaatcaaatataacATCAACAGACACTCTTCCTGATGTCAATGATAGGGAGACTGTCTGCGAGTTCTGTGACAAGAAGTTCAGTTCAAGCAAGGTGCTGCAGAGGCACGTAGAAAGCCACACGAGACAGAGGAAACGCCACAAGTGCCCAGACTGTGACAGGGAGTACGCAGAGAGATGCGAACTGGTCAGGCACCGACTGTCCCACAGACCGAGGGACGAGGTCAGCGTCCAGTGCCCGCTCTGTGGGAAGACACTGGCACACGAGTTTGCCCTCAGGAGACACCACAGATATGTTCACGACGATACCTacagagaaatatacaaaacaaaacGGCAGCTTCAGCAGAAACAGCTGGAGTCTGCACCGTGTCCCTATTGTAATAAGATATTTGACAGTAAGAAACTAAAGCGACATGTAATGTGCCACAACGCAGAGAGAAAACACGTCTGTGAAACCTGTGATAAACGGTTTATCTCAGTGAACCAGCTAGAGTACCACAAGCTGATACACAGGCCGAAAGACGAGATCTGTGTGCAATGTCCAGAGTGCGGCAAGAAGCTGGCGCACTCGATAGCGCTCCGGAAGCATCTGCGGATCAAGCACGAGCGGCAGCAGGAGTTTGTTGTCTGTAATGTCTGCGGCAAGAGTGTCCTCAGGGAGAGGATCAAACGGCATGTGTCTAACCACTCGAAGGAACCGTCAGAGGAAGTCTTAACGTGCACTTTATGCCCGAAGACTTACAGGTCTCGCTACGGTCTACAGTGTCACATCAGGATTAAGCATGAGAACAACCCACCACCGCCGAGGATACTGTGTAGCATCTGCGGCAAGGGATGCTACACGCTGTACGAGCTCAAGAGCCACATGACCAGACATTCCGACGAAAGGAGATATGCGTGTCATTTATGCAATAAAACGTACAAGCTACTATCTGCGTTGAACCATCACATTCGAGTCCATAAAGATGAGAGACCGTACCTGTGTAATATTTGCCAGAAAGGATTCCACACATCTACAATTCTCAAAAAACACGTCAAAATGCATATCAGAGAGAAAATAAGGGCTGGTGTTGATATAACTGAGCAAGAGAAAGATCTAATTACTAACGGGAAGGAGAAACtgcattaa
Protein Sequence: MDYEMDSEMAKLALQSTRQHGNLCSLNLSNNDKINVAHSFKILCEESEHILKEILRTQQFNPFEEHVSKLNNQNETEEVVKLEEIVNDDVKIEMIRNDDSIDNSDYLCNMEVKDELSNSNEETVLKSEPVQIRRVRERKLRNRKVDSFDLLALSCKYCNRGFRSQRVLQKHVDLHIKQKKHQCQVCKKSFIKKSELVSHSNVHKSNITSTDTLPDVNDRETVCEFCDKKFSSSKVLQRHVESHTRQRKRHKCPDCDREYAERCELVRHRLSHRPRDEVSVQCPLCGKTLAHEFALRRHHRYVHDDTYREIYKTKRQLQQKQLESAPCPYCNKIFDSKKLKRHVMCHNAERKHVCETCDKRFISVNQLEYHKLIHRPKDEICVQCPECGKKLAHSIALRKHLRIKHERQQEFVVCNVCGKSVLRERIKRHVSNHSKEPSEEVLTCTLCPKTYRSRYGLQCHIRIKHENNPPPPRILCSICGKGCYTLYELKSHMTRHSDERRYACHLCNKTYKLLSALNHHIRVHKDERPYLCNICQKGFHTSTILKKHVKMHIREKIRAGVDITEQEKDLITNGKEKLH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344287;
90% Identity: iTF_01344287;
80% Identity: -