Sful003824.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis fuliginosa
Gene Symbol
-
Assembly
GCA_961205875.1
Location
OY540811.1:2134654-2136531[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.9 1e+02 3.8 0.5 5 20 75 90 73 92 0.88
2 20 0.036 1.9 9.2 0.2 1 23 98 120 98 120 0.97
3 20 9.4e-05 0.0051 17.3 2.3 1 23 126 148 126 148 0.96
4 20 0.016 0.86 10.3 4.7 1 23 154 176 154 176 0.99
5 20 0.003 0.16 12.6 3.1 1 23 182 204 182 204 0.97
6 20 9.4e-05 0.0051 17.3 1.9 1 23 210 232 210 232 0.98
7 20 0.0013 0.07 13.8 0.3 1 23 238 260 238 260 0.99
8 20 0.13 7.1 7.4 1.8 1 23 266 288 266 288 0.98
9 20 0.0038 0.2 12.3 1.3 1 23 294 316 294 316 0.96
10 20 0.0013 0.072 13.7 4.0 1 23 322 344 322 344 0.98
11 20 1.2 62 4.5 0.8 8 23 352 367 351 367 0.90
12 20 1.9e-05 0.001 19.5 1.5 1 23 373 395 373 395 0.99
13 20 0.029 1.6 9.5 2.0 1 23 401 423 401 423 0.96
14 20 0.0004 0.022 15.4 2.6 1 23 429 451 429 451 0.99
15 20 0.0043 0.23 12.1 2.4 1 23 457 479 457 479 0.98
16 20 0.0013 0.072 13.7 1.6 1 23 485 507 485 507 0.98
17 20 0.0027 0.14 12.8 0.5 1 23 513 535 513 535 0.97
18 20 0.0026 0.14 12.8 0.3 1 23 541 563 541 563 0.98
19 20 0.0018 0.096 13.3 1.1 1 23 569 591 569 591 0.98
20 20 3.5e-05 0.0019 18.7 0.9 1 23 597 619 597 619 0.98

Sequence Information

Coding Sequence
ATGCATGAACATTTACAAAGTCATGAATATAATAAATCCAATGAAACTATATTATTAACACATGAAAACAatgtagaaaattatatttggcTTGACGATGTGAAAGTTGAGTTACCAAGAGGAGAAACAGAATATAATTATAACTGTAGTGATGAACTTATTCAAGAAAATATTGATGAAAAGCATAATAACGGTACAAAAGAAACACCCTTTCAACATAACCAGTGTGTTTACAGCACTGAGAAAAAAAGCAATCTTGTAAAACATCGTTTCACTGGCGAACAACGTCCTTTTAAATGTAATCTATGTGAATACAGTGCCAAGCTGAAAGGAGCTTTGGATAAGCATGTGATGgcacatttaaatgtaaaaccCCATGCATGTGATATGTGTGACTATAGAACTAGAAGCAAAAGTTCACTTATAGTACATAAACGTACTCACTCTGGCGAGCGTCCTTTTAAATGTAACCAATGTGAATACAGCGCCAAACACAAAGTATGTTTGGACACGCATATTATGACACATTCCGAAGTAAAACCCTATGCGTGTGATATGTGTGACTATAAAACTACAAGGAAGTGTAGTCTTGTAATACATAAACGTAATCACACTGGCGAACGTCCTTTTGAATGTAACCAGTGTGAATACAATTTCAAAGAGAAACAAACATTGGTGAAACATATGAAGTTACATTTAGAAGAAAAACCCTATGTATGTGATATATGTGACTATAGAACTATAAGCAATGTTAGACTTGTAGAACATAAACGTACTCACATCGACGTACCTCGATTTAAATGTAACCAGTGTCAATACAGCGCAAAGGAAAAAGAAAGATTTGACATGCATATGATAAAACATTCAGGTTTGAAAACACATGCATGTGATATATGTGACTTTAGAACTACATCCAATAGTAGACTTGTAGAACATAAACGTATTCACAGTGACGAACGTCCTTTTAAATGTAATCAATGTGATTATAGTGGCAAGCAAAAAAGAAGATTGCACCAACACATGATGATACATTCAGGTGTAAAATCCCATGACTATAGAACTACAACCAATAGTACACTTCTACAACATAAACGTAGTCACACTGGCGAACGTCCTTTTAAATGTAATCAGTGTGAATATAGTGCTAAGCAGAAATCAACATTGGTCCAACATATGATGACACATTCAGATATAAAATCACATGCATGTGATATGTGTGACTTTAAAACTAAGGTCAATTATAGACTTGTAGCACATAAACGTACTCATACCGGTGAATGTCCATATAAATGTAATCAATGTGAATACAGCGCCAAACACAAAGTAAGTTTGGACACGCATATGATGACACATTCAGGTCTAAGACCCTATGCATGTGATATGTGTGACTATAAAACTAAAGTCAAATGTAGTCTTGTAGTACATAAACGTACTCACACTGGCGAACGTCCATTTAAATGTAACCAGTGTGAATACAGCGCTAAGGAAAAAGGTAAACTTGCAAGACATCAACGTTTTCACAGTGACAAACGTCCTTTTAAATGTATCCAGTGTGAATACAGCGCCAAGGATAAAGGGAGTTTGGTCATGCACATGAGGACACATTCCGGCGTAAAACCTTATGCGTGTGATATGTGTGACTATAAAACTGCAGCCAGTAGTAAACTTGTAATACATAAACGTACTCATACTGGTGAATCCCCTTATAAATGTCACCTTTGTGAATACAGCGCCAAGCAGAAAGGAGCTTTGGACTATCACATGGGTACTCATTTAAGTGTAAAACCTTATGCGTGTGATATATGTGACTATAAAACTAAAACCAATAGTAAACTTGTAGTACATAAACGTACTCATACTAGCGAACATTCCTCTTAA
Protein Sequence
MHEHLQSHEYNKSNETILLTHENNVENYIWLDDVKVELPRGETEYNYNCSDELIQENIDEKHNNGTKETPFQHNQCVYSTEKKSNLVKHRFTGEQRPFKCNLCEYSAKLKGALDKHVMAHLNVKPHACDMCDYRTRSKSSLIVHKRTHSGERPFKCNQCEYSAKHKVCLDTHIMTHSEVKPYACDMCDYKTTRKCSLVIHKRNHTGERPFECNQCEYNFKEKQTLVKHMKLHLEEKPYVCDICDYRTISNVRLVEHKRTHIDVPRFKCNQCQYSAKEKERFDMHMIKHSGLKTHACDICDFRTTSNSRLVEHKRIHSDERPFKCNQCDYSGKQKRRLHQHMMIHSGVKSHDYRTTTNSTLLQHKRSHTGERPFKCNQCEYSAKQKSTLVQHMMTHSDIKSHACDMCDFKTKVNYRLVAHKRTHTGECPYKCNQCEYSAKHKVSLDTHMMTHSGLRPYACDMCDYKTKVKCSLVVHKRTHTGERPFKCNQCEYSAKEKGKLARHQRFHSDKRPFKCIQCEYSAKDKGSLVMHMRTHSGVKPYACDMCDYKTAASSKLVIHKRTHTGESPYKCHLCEYSAKQKGALDYHMGTHLSVKPYACDICDYKTKTNSKLVVHKRTHTSEHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-