Basic Information

Insect: Sialis fuliginosa
Gene Symbol: gfi1b
Assembly: GCA_961205875.1
Location: OY540810.1:11155838-11157618[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00073 0.039 14.5 1.9 1 23 126 149 126 149 0.97

2 12 1.7e-07 9.3e-06 25.9 1.0 3 23 157 179 155 179 0.89

3 12 0.00043 0.023 15.3 0.2 2 23 184 206 183 206 0.92

4 12 1.1e-05 0.00057 20.3 1.6 2 23 209 231 209 231 0.96

5 12 0.00085 0.046 14.3 1.0 1 23 235 257 235 257 0.96

6 12 0.044 2.4 8.9 0.3 3 23 265 284 264 284 0.97

7 12 0.00011 0.0059 17.1 0.5 1 23 290 312 290 312 0.96

8 12 0.0004 0.021 15.4 0.4 1 23 319 341 319 341 0.97

9 12 8.6e-05 0.0046 17.5 0.8 1 23 359 382 359 382 0.96

10 12 0.00039 0.021 15.4 4.4 1 23 388 410 388 410 0.95

11 12 2.1e-06 0.00011 22.5 2.9 1 23 416 438 416 438 0.99

12 12 7.5e-05 0.004 17.7 6.2 1 23 444 466 444 466 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00073	0.039	14.5	1.9	1	23	126	149	126	149	0.97
2	12	1.7e-07	9.3e-06	25.9	1.0	3	23	157	179	155	179	0.89
3	12	0.00043	0.023	15.3	0.2	2	23	184	206	183	206	0.92
4	12	1.1e-05	0.00057	20.3	1.6	2	23	209	231	209	231	0.96
5	12	0.00085	0.046	14.3	1.0	1	23	235	257	235	257	0.96
6	12	0.044	2.4	8.9	0.3	3	23	265	284	264	284	0.97
7	12	0.00011	0.0059	17.1	0.5	1	23	290	312	290	312	0.96
8	12	0.0004	0.021	15.4	0.4	1	23	319	341	319	341	0.97
9	12	8.6e-05	0.0046	17.5	0.8	1	23	359	382	359	382	0.96
10	12	0.00039	0.021	15.4	4.4	1	23	388	410	388	410	0.95
11	12	2.1e-06	0.00011	22.5	2.9	1	23	416	438	416	438	0.99
12	12	7.5e-05	0.004	17.7	6.2	1	23	444	466	444	466	0.98

Sequence Information

Coding Sequence: ATGTTAATGGAATGTGCTCCTGTCACAGTAgatgaaaatgatttttatccATCAAATATTTGTGTGAATTGCGTAGATCAACTTCATACAGCATATCTATTCCGTCAGAAATGTTTGGGTTCAGATCGTATACTGAAGTCTATTGATATATtagatgtaaaaattaaaattgaaaaacatcaGATAAGTGACACTCCTCCTAGATGTATAATACTTAAGAATGCACTTGCAAAAGACAAGAGTGAGACTAACAATGATAATCAATTAAGTACACCGATTAAAATAGAGGTCGATAATGAAGAAATTAATGTGGACAATTGCCAATATGAAGAATCAGAGTCAGATGATACCGAGAAACAACAGTTACCTATACAGTACAACTGTAAAAAGTGTGACGAAATATTTACAAGTCTAGTCAAATTCActgatcataaaaaaaaaattcacggtAATAAACATCGGCATTTATGTAATGTGTGTGGTAAAACATTTGCTCGGCCTTCGATGTTGAAACGCCACATGAATTCTCAAGTACACGCATCGGTTTGGAAATGCTCAAAATGTCAAACAATATTCCCCAGAGAATCTGCCTTGAAGGAACATTTAGCAGCTAAACATCCACCAGAATGTGATATTTGTAATAAGAATTTTGCTTCTAGACTGCATTTACGTAGGCATATAATGAGAATTCATGAACCCAAGCATTCGTGTGATGTATGTTCTGTGTCGTTCAATACGGAAGCTAAATTAAAAAACCATAAAATTATTCACGATGATCATAAAATACGAATATGTGATTTATGTGGTCAAAAAgTTAGTGCTAACAACGTTCAAAGGCACAGACAAACACATACAGGTTTAAGAAGACATATGTGCGATATCTGCGGAATGGGCTTCATTCAAAAACCAACACTGAAAGAACATCGAGCAAAACACTCTTTAGGAGGAACTCCTTTCAATTGCGTACGCTGTAAAATAAGTTTCCCAGACGCAGATTTCCTAAAACAGCACATGGATTCGCATCCCAAATACAGACGCGGTCCTTTAAGCATTCCGAAAACAGGCGATAAAGAGTTTGTGTGTAAATATTGCGACAAGAAATACAAATCATACGTCGGCGTTCAGTATCACATGCGAGCCGCGCACACAAACGAACGGCCATACTTGTGTAATATGTGTGGGAAGTCTTTCACGCAGGAACAACAACTTCAGTGTCACATGCACATCCACACAGGGGAAAAACCGTACAAGTGCGAGTACTGTGAAAAGAGGTTCGTGCAGCGAGCTCATGTTCAGTCGCACATGCGCCTCCACACGGGTGAAAAGCCGTATGAGTGTCCGTTCTGTCACAAGACTTTCCGGCACTTGACAACGTTGCGGGatcataagaaaatacacacgGGCGAAACAAATACGAAGAAAAGGAGGTACAGACATCCAAGGATAAAGTGA
Protein Sequence: MLMECAPVTVDENDFYPSNICVNCVDQLHTAYLFRQKCLGSDRILKSIDILDVKIKIEKHQISDTPPRCIILKNALAKDKSETNNDNQLSTPIKIEVDNEEINVDNCQYEESESDDTEKQQLPIQYNCKKCDEIFTSLVKFTDHKKKIHGNKHRHLCNVCGKTFARPSMLKRHMNSQVHASVWKCSKCQTIFPRESALKEHLAAKHPPECDICNKNFASRLHLRRHIMRIHEPKHSCDVCSVSFNTEAKLKNHKIIHDDHKIRICDLCGQKVSANNVQRHRQTHTGLRRHMCDICGMGFIQKPTLKEHRAKHSLGGTPFNCVRCKISFPDADFLKQHMDSHPKYRRGPLSIPKTGDKEFVCKYCDKKYKSYVGVQYHMRAAHTNERPYLCNMCGKSFTQEQQLQCHMHIHTGEKPYKCEYCEKRFVQRAHVQSHMRLHTGEKPYECPFCHKTFRHLTTLRDHKKIHTGETNTKKRRYRHPRIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344265;
90% Identity: iTF_01344265;
80% Identity: -