Sful013503.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540818.1:12027958-12030090[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.8e-05 0.0042 17.6 1.3 1 23 121 143 121 143 0.96 2 14 7.9e-05 0.0042 17.6 1.2 2 23 240 261 239 261 0.96 3 14 0.0014 0.076 13.6 0.8 1 23 265 287 265 287 0.95 4 14 0.97 52 4.7 0.1 3 23 310 330 308 330 0.93 5 14 0.044 2.4 8.9 2.1 1 23 338 360 338 360 0.97 6 14 0.00053 0.028 15.0 1.1 1 23 365 387 365 387 0.97 7 14 0.0002 0.011 16.3 0.3 1 23 396 418 396 418 0.97 8 14 7.2e-05 0.0039 17.7 1.5 1 23 423 445 423 445 0.98 9 14 1.5e-05 0.00083 19.8 1.3 1 23 450 472 450 472 0.96 10 14 3.2e-05 0.0017 18.8 0.6 1 23 478 500 478 500 0.98 11 14 6.5e-06 0.00035 21.0 1.0 1 23 506 528 506 528 0.98 12 14 4e-06 0.00021 21.7 2.3 1 23 534 558 534 558 0.99 13 14 1.7e-05 0.00094 19.6 0.3 1 23 564 586 564 586 0.97 14 14 7.5e-05 0.004 17.7 10.6 1 23 592 614 592 614 0.96
Sequence Information
- Coding Sequence
- atggatTCATTACCTTCtgaaagtataaataaaacatgtagATCATGTATGAAAGATTCGTCaaatttttgttctatattttctgcaattaactttaaaaataaaaaagttcacTTATTTGAAATGTTTGAAGAGTGTACCTCAATacagGTCATGTCAGAAGATGGATTACCAGAAACAATATGTTTACAATGTGTAAGGAAATTAAAGAAAgcatatagttttaaaaaacaatgtCAAAAATCAAATAGAAATTTTCACAAACTGTTAAATCATAACGATAAAATATCTAAAGGACCTACAATAGTATTGAAAGATGAAGAATCTTTGTTAGAGCCTtctttaaaatttgaaacattacACATTTGTGAATtatgtgaaaaaatatttaaaacagcaAAAACATTAAAATCGCATATTGAAAATcacgaaaataatatttttaatagagaACCATTAGATTTGTGTAATGataaagaaaacaattattttttacaaaaaaaaattaagagtgaagtagaatcaaaagataaaaacaaaaactttaaaCTGTGTGAATTTTGTTCTGAATATATTCCTGCTAATAATGAATATGAAGAACACATGAATTTGCATTTGAAGAACATcaatcaaaatacaaaaaccaAAACTACTATCAGAAAAACTACAAACcgtaaatttaaaaagaaagtcTCAAGAATAGTTcgtaaacatttaaaatgtgtTATCTGTCAAAAACAGTTTAATAAATTATCTCTTTTAAATAAACACTTGATGAATCACGAGACTTTATTCACTTGTGATATCTGCGATAAAGAATTTACAAAATCATTACCCTATATTCGGCATTTTCAAGAACATATTACAGCGGCTATTTATTTAAGAGGTTCCAGTTCTCAAAGTGAATTCATGGAAGACAATATGGCATGTTACATATGTTCAAAAGAATTTCTTACAGTGATAGATTTGGACAATCACATGTACCAACACAATATAGACAACGAAGGAAATTTTGTATGCGATATTTGTTGTTGTATTTTTGAACAGGAAGGACAACTGAAAATCCATCTTAACAATCACAATAAACTACTCTACAAATGCAGACAATGCCTTTTAGTATTCGATACATCAGATGAATTAAAAGAGCACCAACAGTTTcatataaaattagaaaataaatcgtCACATACGTGTGCTATTTGTGAACTAAAATTTCAAGACAGATCCGAACTAATACAACATATAATTGTACACGTAAATGATGTGTACAAATGTCAACTTTGCAGTTTTACTTTCAATGATCCAGTAACTTTAAAGTCTCACTTGAAAAATCATTCTTCTAGCGATTTTTTGTGCTCCATGTGtggaaaaaaatttacatcatCGCCAAGACTTATACAGCATTTAAGGAaacatataaatgaaaaacCGTACGTCTGCTTGATATGCAATAAATTCTACACATCGAAAAGTGTTTTGCGAGTTCACGAACGCATACACACCAATGATAAACCCTTCATATGCTCGTATTGCGGATATGGTTGCCGTCAGAGCGGTGATTTACAGATACATGTCCGCACTCACACAGGTGAGAAACCGTACAAATGTCCTTTTTCCGACTGCGACCGTAGATTCACTACGTCTAGTCAACGCAAAGAGCATATCAGACGTCATACTGGAGAGAGAAGCCATGTTTGCAATGTTTGCGGAAAAGCTTTCGGTGAATCAAAGACGCTGAAGGTTCACTTAATGATACATTCGAATACACGTTCTCATTGTTGCACAGTCTGTGATAAAGCGTTTCGACGAAAACACCATTTGAAAATCCATATGAAGCAACATTAA
- Protein Sequence
- MDSLPSESINKTCRSCMKDSSNFCSIFSAINFKNKKVHLFEMFEECTSIQVMSEDGLPETICLQCVRKLKKAYSFKKQCQKSNRNFHKLLNHNDKISKGPTIVLKDEESLLEPSLKFETLHICELCEKIFKTAKTLKSHIENHENNIFNREPLDLCNDKENNYFLQKKIKSEVESKDKNKNFKLCEFCSEYIPANNEYEEHMNLHLKNINQNTKTKTTIRKTTNRKFKKKVSRIVRKHLKCVICQKQFNKLSLLNKHLMNHETLFTCDICDKEFTKSLPYIRHFQEHITAAIYLRGSSSQSEFMEDNMACYICSKEFLTVIDLDNHMYQHNIDNEGNFVCDICCCIFEQEGQLKIHLNNHNKLLYKCRQCLLVFDTSDELKEHQQFHIKLENKSSHTCAICELKFQDRSELIQHIIVHVNDVYKCQLCSFTFNDPVTLKSHLKNHSSSDFLCSMCGKKFTSSPRLIQHLRKHINEKPYVCLICNKFYTSKSVLRVHERIHTNDKPFICSYCGYGCRQSGDLQIHVRTHTGEKPYKCPFSDCDRRFTTSSQRKEHIRRHTGERSHVCNVCGKAFGESKTLKVHLMIHSNTRSHCCTVCDKAFRRKHHLKIHMKQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344247;
- 90% Identity
- -
- 80% Identity
- -