Basic Information

Insect: Sialis fuliginosa
Gene Symbol: Snai1
Assembly: GCA_961205875.1
Location: OY540817.1:20001577-20006207[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.014 0.77 10.5 0.1 1 23 370 392 370 392 0.95

2 12 4.2e-05 0.0022 18.5 1.6 1 23 400 422 400 422 0.99

3 12 8.1e-05 0.0044 17.5 0.2 3 23 431 451 429 451 0.97

4 12 4.3e-06 0.00023 21.6 1.5 1 23 457 479 457 479 0.98

5 12 0.00026 0.014 16.0 0.8 1 23 486 508 486 508 0.97

6 12 1.4e-05 0.00076 19.9 0.5 1 23 514 536 514 536 0.96

7 12 3.6e-05 0.002 18.6 0.3 1 23 542 564 542 564 0.98

8 12 1e-06 5.7e-05 23.5 1.2 1 23 570 593 570 593 0.96

9 12 8e-05 0.0043 17.6 0.7 1 23 599 622 599 622 0.96

10 12 4.5e-05 0.0024 18.3 2.8 1 23 628 650 628 650 0.99

11 12 0.00016 0.0086 16.6 0.4 1 23 656 678 656 678 0.94

12 12 0.0031 0.17 12.5 0.0 1 21 684 704 684 708 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.014	0.77	10.5	0.1	1	23	370	392	370	392	0.95
2	12	4.2e-05	0.0022	18.5	1.6	1	23	400	422	400	422	0.99
3	12	8.1e-05	0.0044	17.5	0.2	3	23	431	451	429	451	0.97
4	12	4.3e-06	0.00023	21.6	1.5	1	23	457	479	457	479	0.98
5	12	0.00026	0.014	16.0	0.8	1	23	486	508	486	508	0.97
6	12	1.4e-05	0.00076	19.9	0.5	1	23	514	536	514	536	0.96
7	12	3.6e-05	0.002	18.6	0.3	1	23	542	564	542	564	0.98
8	12	1e-06	5.7e-05	23.5	1.2	1	23	570	593	570	593	0.96
9	12	8e-05	0.0043	17.6	0.7	1	23	599	622	599	622	0.96
10	12	4.5e-05	0.0024	18.3	2.8	1	23	628	650	628	650	0.99
11	12	0.00016	0.0086	16.6	0.4	1	23	656	678	656	678	0.94
12	12	0.0031	0.17	12.5	0.0	1	21	684	704	684	708	0.92

Sequence Information

Coding Sequence: ATGAGTCAAGTATCACTGTCAGTGCGAGAGAATCCCCACTGTTTAATATGCAACAGCCGTGTAGGAGTCTCCACCAGGAACTCCGTACAAGTATTCAGCAAGCAGgttCAAACCTCATCGGAGCAGTCTATGAGCGCTGTGATCTCAGGGGTGGTGGGAAAAACGCTAACAGAACAAAATGTCCACACACTCCTCATTTGCAAGAAATGTTTCAAACTGTTCCTTGAATATGACGAATTAGAAACaagATTGTATGaaataaaatctgaaataatTAACAACTACAAACGTactattttgaaatatgaaaattcatataCTAATAATGAGTCAGAGTCGATTGAAGCTATACAGAAAGAATTATTGTTAACAGATGTTAAAAAAGAACCGTTAGACGATACCGAAATCGAAATGGctaaaattatttctaaaccaaaaaaaatattaaaaaattcaactgGGCATTCAGaagaaAAATCACAAGACCCAAATGAAGAAGATATAGAAAAACAAATGGAGAAATTACACAGAGATGGTGAACAACATGACAAAACTAATAACGTTTCAGAGATGATGGAAGGAGTAGAAGTGATAAATGAAGACGGTGATAATGTTCCTCAAATATCTATACCTGATACAAGCGATCAAGATGATTCTTCACAAAATTTTCAAGACTTTGGACAAGATGACGAGCCTGTCGATGCAgGTGCTATAGATAATTCAGATGACTCGGACTATCAACCTCCGATGGTTCTAGAAGTAATCCAGAATGGAGACTCCGATGGAGACAAACACGGAGATGAGAACACAGCTGCTCTTTTAGAAGCTGCAGCTTTAGCTGAACAGACTATTCAAGAAGATGgtTCTATTGTATTTAATGTCAAGTTGGAACCAGGTCTTGTATATAAGGATGTTAAACACGTGATGAAATCGAAAATGAGCATGAAAAACATGATAAGAAATAAAACCGAAGATAACCATAGAGAGCTTGTGTCTCGGGAAGGCTCGAGCTACACTTGCCTGGTGTGCGCCGAGGAGGGCAGTCACGTTGAGGGCGACGGCAAGGCGATGATGGCTCACGTGAAGGGGTCTCACGAGCTGCGCGTGTACATCTGCGATGTGTGCGGTGATTACTTCCGAAAGCGCAACGAACTGTCGGCACATCTTGACGAGCACGTAGCGGCAGAGGAGGGGGACTTCCAGTGCGAGGTGTGCAACAGGATATTCTCAAATCTGAGGCTGTTCAGGATACACAAGAGGATGCACTACCCGCAGTCAAAGCTGTGGGCTTGTGAGACTTGTGGAAAGAGATACagTTCTCGTAATCTACTGGACGAGCACATTAACACTCACACGGGTGTTCGTCCATACATCTGCACGGTCTGTAGCAAAGACTTTGCCTCCAAGTACACCTTCCGTGCTCACATGAAAACGCACGAAGTGCGACCCAGACCCTTTGCCTGCTCCCAGTGCGAAAAGTCGTTCTTGAGCGCGCAGAATCTGACACAGCACGAGAGAACACACACAGGGATAAAGGATTATATTTGTCATTTGTGCGGTAAAGCATTTGGTTCGCCGCACAACCTGGAGGTGCACAGCATCGTGCACACGGGGTACAAGCCATTCATCTGCCGGACGTGTGGCAAGGCGTTTGCTCGCAAGGCCGAGATACGAGACCACGAGCGCACTCACACGGGCGAACGGCCATACCAGTGTGAATTCTGCGGTGCCACGTTCAGCCAACGCAGCAACCTGCAGTCGCACAAGCGTGCGACCCATTACGACGACAAGCGGTACAAGTGTGCTGAGTGTAATAAGGGATTCAAGAGGAGAAGATTATTAGACTACCACATCAAAGCGGTTCACACAGGCGAGCGTCCTTTCAAGTGCAACCTGTGCGAGGCGACGTTTGTGTACCCGGAACACTTCAAGAAGCACCGGCGTGTACACACCGGGGAGAAACCGTTCTTGTGCGAGGTGTGCGGCAAGGCGTTTAACTCGAGAGACAACCGCAATGCGCACAGATTTGTGCACAGCGATAAGAAGCCGTACGAGTGTCTTGTGTGTGGCATGGGCTTCATGCGAAAACCTCTACTGTATGCTCACATGGAGGCACagGGCCATTTAAACGATACTATTATAGTAAATCAACCACGTCTCACAACAGACGAAGATCAACTAGTTACATTCTCAATGACAGATGACATGGAAGTAGTCGGTGAAGAAGAGACGCAAGATTTAGATGAGAATGAAGATACTAAACTGTACATAACTACCGACTTAAAAGACCACGTTATTATCAAAGATGCAGAAGGAAATGATAGCGCTGTTATAGTTGGAACTACAACAGTCGATATGGATCAAGATACTGTAGAACATTTAATAATTGATGGACAGACGTACGAAATATTAGAAAAAGTAGACGTCACGGCAGATAGTAATTAA
Protein Sequence: MSQVSLSVRENPHCLICNSRVGVSTRNSVQVFSKQVQTSSEQSMSAVISGVVGKTLTEQNVHTLLICKKCFKLFLEYDELETRLYEIKSEIINNYKRTILKYENSYTNNESESIEAIQKELLLTDVKKEPLDDTEIEMAKIISKPKKILKNSTGHSEEKSQDPNEEDIEKQMEKLHRDGEQHDKTNNVSEMMEGVEVINEDGDNVPQISIPDTSDQDDSSQNFQDFGQDDEPVDAGAIDNSDDSDYQPPMVLEVIQNGDSDGDKHGDENTAALLEAAALAEQTIQEDGSIVFNVKLEPGLVYKDVKHVMKSKMSMKNMIRNKTEDNHRELVSREGSSYTCLVCAEEGSHVEGDGKAMMAHVKGSHELRVYICDVCGDYFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWACETCGKRYSSRNLLDEHINTHTGVRPYICTVCSKDFASKYTFRAHMKTHEVRPRPFACSQCEKSFLSAQNLTQHERTHTGIKDYICHLCGKAFGSPHNLEVHSIVHTGYKPFICRTCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCAECNKGFKRRRLLDYHIKAVHTGERPFKCNLCEATFVYPEHFKKHRRVHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMEAQGHLNDTIIVNQPRLTTDEDQLVTFSMTDDMEVVGEEETQDLDENEDTKLYITTDLKDHVIIKDAEGNDSAVIVGTTTVDMDQDTVEHLIIDGQTYEILEKVDVTADSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344238;
90% Identity: iTF_01344238;
80% Identity: -