Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540816.1:20540373-20543419[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00072 0.039 14.6 2.8 1 23 171 193 171 193 0.97

2 13 5.1e-05 0.0027 18.2 5.0 1 23 199 221 199 221 0.97

3 13 8.3e-06 0.00045 20.7 4.2 1 23 227 249 227 249 0.97

4 13 0.52 28 5.6 2.6 1 16 255 267 255 274 0.71

5 13 1e-06 5.6e-05 23.5 0.4 1 23 280 302 280 302 0.97

6 13 8.8e-05 0.0048 17.4 1.0 1 23 439 461 439 461 0.98

7 13 0.00036 0.019 15.5 1.9 1 23 467 489 467 489 0.98

8 13 3.7e-06 0.0002 21.8 1.4 1 23 495 517 495 517 0.98

9 13 7.8e-07 4.2e-05 23.9 0.8 1 23 523 545 523 545 0.98

10 13 0.0042 0.22 12.2 1.0 1 23 551 570 551 570 0.92

11 13 1.8e-07 9.8e-06 25.9 0.5 1 23 576 598 576 598 0.97

12 13 0.00099 0.053 14.1 0.1 1 23 604 626 604 626 0.98

13 13 7.9e-05 0.0042 17.6 1.7 1 23 632 654 632 654 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00072	0.039	14.6	2.8	1	23	171	193	171	193	0.97
2	13	5.1e-05	0.0027	18.2	5.0	1	23	199	221	199	221	0.97
3	13	8.3e-06	0.00045	20.7	4.2	1	23	227	249	227	249	0.97
4	13	0.52	28	5.6	2.6	1	16	255	267	255	274	0.71
5	13	1e-06	5.6e-05	23.5	0.4	1	23	280	302	280	302	0.97
6	13	8.8e-05	0.0048	17.4	1.0	1	23	439	461	439	461	0.98
7	13	0.00036	0.019	15.5	1.9	1	23	467	489	467	489	0.98
8	13	3.7e-06	0.0002	21.8	1.4	1	23	495	517	495	517	0.98
9	13	7.8e-07	4.2e-05	23.9	0.8	1	23	523	545	523	545	0.98
10	13	0.0042	0.22	12.2	1.0	1	23	551	570	551	570	0.92
11	13	1.8e-07	9.8e-06	25.9	0.5	1	23	576	598	576	598	0.97
12	13	0.00099	0.053	14.1	0.1	1	23	604	626	604	626	0.98
13	13	7.9e-05	0.0042	17.6	1.7	1	23	632	654	632	654	0.97

Sequence Information

Coding Sequence: ATGGATAACGTTTGTAGAACTTGTTTGACTTATGATGatgaaaaattatcaatatttaataattatagtgAATCGGAAAATTCGTTTTCATATATAGAAATGATAAAGGAAGTTGCTTCTATACAGATCTCAGTGGATGATGGATTTTCTTCATTAATATGTAGACTATGTGTAGAAAACTTAGAAAGAGCTTATACGTTTCGGATTCAGTGTCAAAAGGCTGATACAATCATACGACAGTGTAAAGAAAAcagtattaatattaaaactgaagagctagataaaaataaagttattgaaagcaatgaaataaaaaatgaaccaaattttgtactaaatgaaataaaaactgaaattgATTTAAGTTTGGCTGAAATTAATgacaaaacttttaaattatctgaaaaaacgaaaccagtgaaaaaaaaaagaaaatctgtttctaaaataaaactaactaaAAAGAAAAATGAAGATAATGAACAAaaAATACATAACAGAAAATCACCATATATCTGTCGACAATGCGGGAATTGCTATGTTCGTTCTAGTGGTCTGCAAACTCATTACAGTAAACATACTAAAGGATTACAATTTTGTTGTGAATTCTGCGGCAAAGGATTTTTCCAGTCATGCGATTTAAAGgTCCATATGCGAATTCACACAGGCGAAAAACCATTTTCTTGTTCACAATGTAATAAAACTTTCCGTAGAAATCACGACTTGCTTCGGCATGCGCAGTCCCACAGCACGGTCAAAATGTACACTTGTAAAATCTGCGGCAAAAACCTATCAAGTTTGGTATTTCACATGCGAATGCACAGAAATGAGAAACCATACCCTTGCCAACAATGTGAGAAGAGATTTGCAACTAAAAGTGATTTAAATACACACATGGTCGTACATACAGGGGACAAGAAATACATCTGTAATgtCGCATTGGACGACGGTTTTTCATCTTGGATATGCAAACTTTGTGTAGAAAGTTTACAAAATGCTTTTGCATTTCGAATACAATGTCTAAAAGCTGATACAATAATACGACAGTGTAAAGAAAACAATATCAGTATTAAATCAGAAGATCCCGAGAGTGAAGATCATCTAGATGTAGAAATCAAAGCAGAAGTTATTGTAGATTTAAGTGAAAATGAAGATGAAGCGAACGGGAACTTGaagaaaacaaaattgaaaataaaaaaatctaaaaaacataaaaagtctcatataaaaaaagcaaaaaagatAAAACAAGAATTAGATGAGAAAAAAACTGACCACCATTTATATGAAGTCAATGAAAACGGTGATGTGCAATATCCATGTTTTATTTGCAAAGaagtttttgagaaaaaagtagattttataaaacatacaaaGACACATAACAGAAAATCTCCATACATTTGCCGTCAGTGTGGAAACTGCTATGCACAATCTAGTGGGCTGAGAATACACTACAATAAACATACGATAGGGCTGCCATTCTGTTGTGAGATTTGCGGTAAAAGATTTCTCAGATCTGGTGACTTAAAGGTCCACATGAGAATTCATACAGGAGAAAAACCATATTCATGTTCTCAATGCGACAAAACATTCCCAAAGAAAAGTGCGCTCAACGTTCATCTACAATCACACAGCACTATAAAACTGTACACGTGTAAAATCTGTGGCAAAAACCTATCAAGTCTAGTATCACACATGAGAAAACACAGAAACGAGAAACCGTACCCTTGCCGACAGTGTGATAAAAGGTTTACGACTAAAAGCGATTTAAATGCGCACATGGTTGTGCATAcgggaaacaaaaaatatgtatgcaaTGTTTGTAATAAAGCATTCGGATGGAACACTGGTCTTAGATTACATATGTTGATACATACTAACAAAAGAGCTTTCATCTGCGCCCAGTGTGGGAAAGCTTTTATGTATAAACATGTTTTGCAATCTCATATGAAATCACATTAG
Protein Sequence: MDNVCRTCLTYDDEKLSIFNNYSESENSFSYIEMIKEVASIQISVDDGFSSLICRLCVENLERAYTFRIQCQKADTIIRQCKENSINIKTEELDKNKVIESNEIKNEPNFVLNEIKTEIDLSLAEINDKTFKLSEKTKPVKKKRKSVSKIKLTKKKNEDNEQKIHNRKSPYICRQCGNCYVRSSGLQTHYSKHTKGLQFCCEFCGKGFFQSCDLKVHMRIHTGEKPFSCSQCNKTFRRNHDLLRHAQSHSTVKMYTCKICGKNLSSLVFHMRMHRNEKPYPCQQCEKRFATKSDLNTHMVVHTGDKKYICNVALDDGFSSWICKLCVESLQNAFAFRIQCLKADTIIRQCKENNISIKSEDPESEDHLDVEIKAEVIVDLSENEDEANGNLKKTKLKIKKSKKHKKSHIKKAKKIKQELDEKKTDHHLYEVNENGDVQYPCFICKEVFEKKVDFIKHTKTHNRKSPYICRQCGNCYAQSSGLRIHYNKHTIGLPFCCEICGKRFLRSGDLKVHMRIHTGEKPYSCSQCDKTFPKKSALNVHLQSHSTIKLYTCKICGKNLSSLVSHMRKHRNEKPYPCRQCDKRFTTKSDLNAHMVVHTGNKKYVCNVCNKAFGWNTGLRLHMLIHTNKRAFICAQCGKAFMYKHVLQSHMKSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -