Sful002977.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sialis fuliginosa
Gene Symbol
-
Assembly
GCA_961205875.1
Location
OY540810.1:23714757-23717265[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8.9e-07 4.8e-05 23.7 0.5 2 23 276 297 275 297 0.97
2 9 2e-07 1.1e-05 25.8 2.2 1 23 303 325 303 325 0.99
3 9 4.1e-07 2.2e-05 24.8 2.0 1 23 331 353 331 353 0.99
4 9 1e-07 5.5e-06 26.7 1.0 1 23 359 381 359 381 0.98
5 9 1.3e-07 6.8e-06 26.4 3.0 1 23 387 409 387 409 0.99
6 9 1.8e-05 0.00095 19.6 0.7 1 23 415 437 415 437 0.97
7 9 3e-06 0.00016 22.0 2.0 1 23 443 465 443 465 0.98
8 9 8.7e-07 4.7e-05 23.7 0.3 1 23 471 493 471 493 0.99
9 9 0.00016 0.0085 16.6 1.3 3 23 501 521 499 521 0.98

Sequence Information

Coding Sequence
atggaATACgactttaataaaatttgcCGAATATGTTTATCGGAAGGTGTCatgatgtcaattttcaaagtccacattaataaaaaaataatggcaTGTTCTTCAATACAGGTATGGCAAAACGATGGCCTTCCAGGacaaatttgtaataaatgtgTAGCAAAACTACACATatcatttcaatttaaaaaacaatgtgAAAAGTCTGATGCTAAATTAAGACAATACTTGAACCAAAATACTCAACAAAATACACAAGAAGAGCAAGAACAAAACCAACAACATCCCAATATTCCTGAACCTCCTCCACCGCAGCCACAAAATAACTGTGTGTATGTTGAATGCACGCCCACAGTTGATATTGTATCTACACAAGACATAACGTCACATGAAGAACAAGACCAGTGCCATTATGATAATGGAATACCCGTAACAAGTACGGGCTCTGTGCTTTCTCAAATAACGTATAACCCTCAAAGCATGGATTTGCTTCAACAACAAAACCATATATCAATACCTAGTTATAATATTCCTACTATGGGACAATTTCCGCCAATGTACAATGTACAGCCACTTAATGTAGGACAGGTTTCATTACCTGTGTCAtctagtaataatattttaacattaggAGTTAATCAAGTTCAACAAACGCAAATGCCTTTAGCGCCACAACAAATTCAAATCCAGTCTGTACAACAACCCACTCATCAGCAGCCTCCACCTCACAATCAAATTGATGATCATATTAAAGAAGAGaaagatttaaataaaagagtgggaaaattaaaaaaagaacaaaatcaATTAGATACAGATCAGAAACCTTGCCAGACTTGTGGAAAAATATTCGCAAACAGCGCTAAACTAAACCGACACATGAAGATTCACTCATCAGACATGCCATACAAGTGCAATGTGTGCCAGAAGGCGTTTGCGCACAGCGGCAACTATAAGATCCACATGCGCATGCACACGGATGAGCGTCCATACCGATGCAGCGTATGCGATAAGGGGTGCCGGCAAGCACAAGACCTGGAGAAGCACATGCGGACACACACAGGCGAGCGGCCGCATAGGTGCACATTGTGCCCGCGTGCATTCTCCACGAGCAGCAACCTGATTGCACACGTCCGGACGCACACGGGCGAGAGGCCATACGTGTGCTCTGTGTGCCAGAAGGCGTTCTGCCAGTCGAACGAACTGACAAAGCACATGAGGACGCATACCGGCGAGAAGAGTCATATTTGTTCGGTCTGCCAGAGAGGTTTCAATGGATCAAGCACACTGATTGTCCACATGAGATCTCATACAGGGGAAAGACCCTATATCTGTAGTAAATGTAATAAAGGTTTTGCGCAGTCTAGTTGTTTAGCAATACATATGAAACGTCATAACGGTGAAAAGAACTACAGGTGTACAGAATGTGATCGAGCTTTTGTTGTGAGTACAGACTTAAAAGAACATATGTTGACACATGCTGTTGAAAAACCATACGGATGTAATATGTGCGATAAAAGGTTTCTCAGAGCAAACGATTTAAATAGGCATACAAAAACGCATTCGATGTAA
Protein Sequence
MEYDFNKICRICLSEGVMMSIFKVHINKKIMACSSIQVWQNDGLPGQICNKCVAKLHISFQFKKQCEKSDAKLRQYLNQNTQQNTQEEQEQNQQHPNIPEPPPPQPQNNCVYVECTPTVDIVSTQDITSHEEQDQCHYDNGIPVTSTGSVLSQITYNPQSMDLLQQQNHISIPSYNIPTMGQFPPMYNVQPLNVGQVSLPVSSSNNILTLGVNQVQQTQMPLAPQQIQIQSVQQPTHQQPPPHNQIDDHIKEEKDLNKRVGKLKKEQNQLDTDQKPCQTCGKIFANSAKLNRHMKIHSSDMPYKCNVCQKAFAHSGNYKIHMRMHTDERPYRCSVCDKGCRQAQDLEKHMRTHTGERPHRCTLCPRAFSTSSNLIAHVRTHTGERPYVCSVCQKAFCQSNELTKHMRTHTGEKSHICSVCQRGFNGSSTLIVHMRSHTGERPYICSKCNKGFAQSSCLAIHMKRHNGEKNYRCTECDRAFVVSTDLKEHMLTHAVEKPYGCNMCDKRFLRANDLNRHTKTHSM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01344236;
90% Identity
iTF_01344236;
80% Identity
-