Sful014705.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540819.1:17672493-17676405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0003 0.016 15.8 3.0 1 23 152 174 152 174 0.97 2 14 0.00038 0.021 15.4 8.1 1 23 180 202 180 202 0.95 3 14 3.5e-05 0.0019 18.7 6.6 1 23 208 230 208 230 0.99 4 14 3.7e-05 0.002 18.6 2.4 1 23 236 258 236 258 0.97 5 14 3.6e-06 0.00019 21.8 0.3 1 23 264 286 264 286 0.97 6 14 2.3e-05 0.0012 19.3 0.1 1 23 292 314 292 314 0.97 7 14 0.0005 0.027 15.1 0.3 2 23 320 341 319 341 0.97 8 14 6.8e-06 0.00036 20.9 0.7 1 23 347 370 347 370 0.98 9 14 0.00072 0.039 14.6 0.4 2 23 377 398 376 398 0.96 10 14 0.00056 0.03 14.9 3.3 1 23 449 471 449 471 0.96 11 14 0.00031 0.017 15.7 5.1 1 23 481 503 481 503 0.97 12 14 0.0013 0.071 13.7 0.9 2 23 567 588 566 588 0.96 13 14 0.0088 0.47 11.1 4.6 1 23 631 653 631 653 0.96 14 14 2.5e-05 0.0014 19.1 3.3 1 23 663 685 663 685 0.98
Sequence Information
- Coding Sequence
- ATGGGTACTGCACCTAATGTTTCCAGTGGATTCAGTTATTGGCATTCTGGTGAAACATCTCGCACTGAACCAGTTATCGAAGTACCTCCTCATCTAAGTTATGCTAGTTCTTTGCAAGATGTAACGAAACTAAAAACTTCAAGGCGACCAGTGTTTGTTATGAATGAGAAACAATCACATGATGTATTCGGTATAGCTTGTGATAAAAACTGTGCGTGCGAAGGAACTGACAGTAAACATTTTATGACCCCTCTCGGACCGTTACAACTGACTGCTGAAGAGTGTAACGACATACTAATGAAGCGGGCGGCTGCAGCAGCATCCACATCCACCGGGTCACAACCTATTCAAATTGTGCAAAACGTTCAAATCACACCACCTAGCGAAGCTGGTGACATAAAACCTATTATAAAACGGTCTGCATCTTCAAACGGTATGCCGAAAGAGAGACCTTATGCATGCAACGAGTGCGGAAAGTCCTTTCTGTTGAAACACCATTTGACGACGCACGCTCGGGTTCACACGGGGGAGAGGCCTCACGCGTGTCCCCATTGTGGGAAAGCCTTCGCTCACAAGCACTGTCTCAACACACACTTACTCTTACACAGTAGTGATAGACCTTACCAGTGCTCCGAGTGTAAGAAGAGCTTTACATTGAAACATCATTTACTCACTCACACTCGTGTTCATAGTCGTGAAAGACCGTTTGTCTGCACAGAGTGTGGGCGTTCTTTTCCGCTTAAGCGGCATCTTGTTACACATCAAAAGTTTCATGCCGGTGAGAGACCGTTTGTTTGTCCTGTTTGCGGTGAGTCATTTGCTCAAAAGGAACATTTGGTAATGCACGCACGATTCCACGGTTCTCTCACACCATTTGTATGTCCCGATTGTGGGGCTACGTTTCAGCGCAAGTTTGAACTTGTCAATCACGGTCGACTGCACGGTCGTATTCCCCAGTCTTGTCCTGTCTGTAATAAGGAGTTCTTACAAAAGCGAACACTAGTAGCACATATCAGGTTACACAACACTGACCAGCCTTTCACATGTCTTCAATGCGGAGAAGCGTTCCGTACAAAGCTGGAACTGACGCAGCACATCAAGACTACACACTCGTCCGAGAAGCCGCTGGTCTGCAGCGAGTGCGGCAGCTGTTTCAACAGCCGCGAGGCGATGGCGTTGCATATCCGCCTTCATTCCGGTGACAAGTCGTTCGTGACGGACCTGTGCGTGTTGACGGCATCGCTCCAGACCCACGCCACGGGCCAGCCATCTGGAGTAGCGCAGAATTCGAACGTGAGTCAGGCAAGCAACAGTAATGCTTCCTCGTTGAACAAACCGAAACCCCACATTTGTCCCCACTGTGGCAAGGCCTTTGCCGCTAAACACGGCTTGTTGCAACATAACAAGAGACATCCGGAGGGCGCGTGTACCCTCAGGACTCACGTTTGTGAGACGTGCAATAAAGCGTTCTTCCAGAAAAACCACCTGTTGCTGCACCAACGGCAGCACATGGAATCCAAGCCGAGCGCGATCACGTCGTCTGCAGCGAACCACTCTCCGTCGGGGTCCATGTCGCAGTCTGCTCCAGTCATCTCCCAGGCGTCCATCCAGCAGCAGCAGCAGCAGCAACAACAGCAGCACCAGATACAACAGCATCATCAGAGCGTTTCGTCCAATTCCGTTAATAaaAAACCACTCGTTTGTCATGAGTGCGGCAGCTGCTTCAACAATGCTGAAGCCATGGATCTCCACATCCGTTTACACACGGGCGATAAGACACTAATAACGGACGTGTGTCTTCTGACAGCGTCGTTACAGAACCAGGAAAACTACCACGGCCACCCGACAGACTTGAGCGGCGCGAAACTAATTGTcaagaaaactaaaaatcacATGTGTCCGCACTGCAGCAAAGCTTTCGCAGCCAAGCACGGATTGCTGCAGCACAATAAGAGACATCCGGACGGGACATGCAACGTTAAGGCGTTTGTCTGCGATACGTGCAACAAGGCATTCTATCAGAAGAACCATCTGCTACTGCATCAGCGTCAGCACATGGAAATAAAGAATAGTATGTCTGTGCCTCAAATCAACACTTCGAATATTATATCGCAATCAACGCCTGTTATTTCACAATCGGGAATGGCTCAAATGGCAATGCAGCAATCTAATCAAATGCCGAATCATTATTAA
- Protein Sequence
- MGTAPNVSSGFSYWHSGETSRTEPVIEVPPHLSYASSLQDVTKLKTSRRPVFVMNEKQSHDVFGIACDKNCACEGTDSKHFMTPLGPLQLTAEECNDILMKRAAAAASTSTGSQPIQIVQNVQITPPSEAGDIKPIIKRSASSNGMPKERPYACNECGKSFLLKHHLTTHARVHTGERPHACPHCGKAFAHKHCLNTHLLLHSSDRPYQCSECKKSFTLKHHLLTHTRVHSRERPFVCTECGRSFPLKRHLVTHQKFHAGERPFVCPVCGESFAQKEHLVMHARFHGSLTPFVCPDCGATFQRKFELVNHGRLHGRIPQSCPVCNKEFLQKRTLVAHIRLHNTDQPFTCLQCGEAFRTKLELTQHIKTTHSSEKPLVCSECGSCFNSREAMALHIRLHSGDKSFVTDLCVLTASLQTHATGQPSGVAQNSNVSQASNSNASSLNKPKPHICPHCGKAFAAKHGLLQHNKRHPEGACTLRTHVCETCNKAFFQKNHLLLHQRQHMESKPSAITSSAANHSPSGSMSQSAPVISQASIQQQQQQQQQQHQIQQHHQSVSSNSVNKKPLVCHECGSCFNNAEAMDLHIRLHTGDKTLITDVCLLTASLQNQENYHGHPTDLSGAKLIVKKTKNHMCPHCSKAFAAKHGLLQHNKRHPDGTCNVKAFVCDTCNKAFYQKNHLLLHQRQHMEIKNSMSVPQINTSNIISQSTPVISQSGMAQMAMQQSNQMPNHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -