Basic Information

Insect: Sialis fuliginosa
Gene Symbol: Lrmda
Assembly: GCA_961205875.1
Location: OY540810.1:30560300-30568649[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00012 0.0064 17.0 2.1 2 23 153 174 152 174 0.98

2 11 9.4e-07 5.1e-05 23.6 2.0 1 23 180 202 180 202 0.99

3 11 7.1e-05 0.0038 17.7 3.9 1 23 210 232 210 232 0.97

4 11 0.0024 0.13 12.9 3.4 1 23 238 260 238 260 0.98

5 11 0.0024 0.13 12.9 0.5 1 23 272 294 272 294 0.97

6 11 1.9e-07 1e-05 25.8 0.7 1 23 300 322 300 322 0.96

7 11 1.6e-05 0.00085 19.8 0.3 1 23 328 350 328 350 0.98

8 11 1.3e-06 6.8e-05 23.2 0.6 1 23 356 378 356 378 0.98

9 11 5.7e-05 0.0031 18.0 1.5 2 23 385 406 384 406 0.97

10 11 5.5e-05 0.003 18.1 0.1 1 23 412 434 412 434 0.99

11 11 8.7e-08 4.7e-06 26.9 0.5 1 23 440 462 440 462 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00012	0.0064	17.0	2.1	2	23	153	174	152	174	0.98
2	11	9.4e-07	5.1e-05	23.6	2.0	1	23	180	202	180	202	0.99
3	11	7.1e-05	0.0038	17.7	3.9	1	23	210	232	210	232	0.97
4	11	0.0024	0.13	12.9	3.4	1	23	238	260	238	260	0.98
5	11	0.0024	0.13	12.9	0.5	1	23	272	294	272	294	0.97
6	11	1.9e-07	1e-05	25.8	0.7	1	23	300	322	300	322	0.96
7	11	1.6e-05	0.00085	19.8	0.3	1	23	328	350	328	350	0.98
8	11	1.3e-06	6.8e-05	23.2	0.6	1	23	356	378	356	378	0.98
9	11	5.7e-05	0.0031	18.0	1.5	2	23	385	406	384	406	0.97
10	11	5.5e-05	0.003	18.1	0.1	1	23	412	434	412	434	0.99
11	11	8.7e-08	4.7e-06	26.9	0.5	1	23	440	462	440	462	0.98

Sequence Information

Coding Sequence: ATGCTGATGGCATTTTCTACTGTACATGTATCTTCTGGAGACGGTTTACCAGAATTAATATGCATCCAATGTGTAAATCAAGTAAACCGTGCTTACTCTTTCAAATTACTTTGTGAAAGATCAGAGGCAACTCTACGTCAGTACTTAGGAAAACCTCTCCTTTCAAAATCATGTAAACAAGAAGTTGAAGTACCCCAAATCAATTCCGAATCTTATGACAACCAAGTATTATCATTTGACGGGTTTAATTTTGATTCCGAAGATTCTGAAGACTCGAATAACAAAGTAGACGTACTAATGCAGATGCAAATAAACCCAAATGTTGATTCAACTGATGAAAAATTCATCGCTCAAAGACAGTTGTTCAAAGCATCAAAATCTCACAAaccaaagaaaaaaatatccagCAGTAAACTTAACAAATCAgggagtttaaaaaataaacgtaaCACAAATCAGTGTGATgtctgtaaaaaatatttcgtcaaCTTGAAATCATTTAGGAAACATCTAATGACGCATATTGAAGAACGgccatttaaatgtaaaatgtgCCCACGCAGTTTCACCGAAGAAAACTACCTGAACAACCACATGCGTACACATATTCCAGATGAACAGAAGCCTCATGAATGTGAAGTGTGCAAGAAACGGTTCATCCATGCAACACTGTTGAGCAAACACATGCTAAAACACTCAGGTGAAAAACCGTTTGTATGCAAGATCTGCCACAAGGGATGCTATGCTGAGAACAGTCTGTTGAAGCACATGAAGATACATGAAGCTCAAGAGGGGGACCCTTCGATGCTCAAACATGTCTGCGTCTACTGCAAGAGAGAGTTTGGCGATGCTGCGACGCTGGACACGCACATAAAACAACACACTGGAGATAGACCGTTCTTGTGTAATATATGTGGAAAGAGCTTTCCGCAGAGGTTTAATCTAGAGTTGCATCTACGAACGCACACCgGTGAGAGACCATTTGTTTGTGAGATATGTAAGAATGGGTACGTGTCAAAGGCTAGCCTCAAGATCCACATGCGCACTCACACAAATGAGAGACCCTTTGTCTGTGACTTCTGTGGCAAAGCCTTCAGACAGTCCGGGGATCTGACGAGCCACAAGAGACTCCATGGTACAGAGAAACCTATCGAGTGCAATGTCTGCCAAAAGAGGTTCACGACCGTGATGAAGCTGAAGTACCATATGCGTAATCACACGGGCGAACGTCCATACGTTTGTTCAGTCTGCGGTCGTGGCTTCACAGTCAATACGATCTTGCTGCGGCACATGCGCGTTCACTCCGGAGAGAGGCCGTATGTCTGCGTCACTTGTGGCAAGGCCTTCTCGCAGTCCAGCACACTCAACACACACATGAAGgtcCATGCACCATCACCTAAAACCACGGAATCAGTATCAAGAATGCCCAAGTTCCACCAACAGAATGATACAGGAAATCGTCTCATGGCATCAAACGAGCCTCGGTTGATGCCTCATCACAACTCCAGACTAGAAGCGGACAACAGAATACTTACGGAGAACGACGATGCCCGTTTACTCACAAGTGAAGCATCACGGCTCTTAGCAGCAGATAATATAAGATTGCTTGGAACAGATACAACGCGATTGTTGATTAGTGATACTACAAGATTGATAACTAATGAAGGACCAAGGTTATTGAATGTTAACGAAAACCAAAGACTCTTGGTTGGCGATAATAGATTGGTGACAAATGATGCTTCTAGAATACTTCCAAATGATAACACGAGACAGATAGTTATTGAGAATTCACGCCAGTTGACCATAGAAAATTCTAGAATATTGACCGATAATGTACCCGATAGTTTTAAGATACCAGAAATATTGGGCAATATGTATggaaagaaaactaaaatgtTAGATTTGAGTTTTAATTCACTTATTACGCTACAAGGACTTGAAAGCTTTCAAAATCTTGAAGAACTTATACTGGACAATAATCAACTTTCTGATACAGTGCAGTTTCCACATTTGCCGTTTTTACATACACTGtcattaaacaaaaacaatttgaTCAATTTAGAAACACTTATTCTGAAAATATCTGAAAGAATACATAATTTGTCATATTTAAGTCTTTTAGGCAACCGAGCTTGCCCTGACCAATTGTCTGACATTGAAAAAGACCAAAATGATTATCAACGTTACAGaTATTTTGTATTGTACCACATTCCTACTCTAAAATTTTTGGATTCAACTCGAGTGACAGACACAGAAAAACAAGAAGCTCGACGCAGAGGACAGTTTACAAAAGTTGTGCGCCCTAATGACTTTGAAACACGCCTTGACAATTCCATTGTAATTTCTCAGTTCACTCCTCTACCAGATTCTCAGCGTGGTTATGATGATCATAaagGTGCTTATGGTAAATGCAGATATAGATATTCAGGAAAACATTCTGAGGGTAAtcgatttatatttaataatgatttataa
Protein Sequence: MLMAFSTVHVSSGDGLPELICIQCVNQVNRAYSFKLLCERSEATLRQYLGKPLLSKSCKQEVEVPQINSESYDNQVLSFDGFNFDSEDSEDSNNKVDVLMQMQINPNVDSTDEKFIAQRQLFKASKSHKPKKKISSSKLNKSGSLKNKRNTNQCDVCKKYFVNLKSFRKHLMTHIEERPFKCKMCPRSFTEENYLNNHMRTHIPDEQKPHECEVCKKRFIHATLLSKHMLKHSGEKPFVCKICHKGCYAENSLLKHMKIHEAQEGDPSMLKHVCVYCKREFGDAATLDTHIKQHTGDRPFLCNICGKSFPQRFNLELHLRTHTGERPFVCEICKNGYVSKASLKIHMRTHTNERPFVCDFCGKAFRQSGDLTSHKRLHGTEKPIECNVCQKRFTTVMKLKYHMRNHTGERPYVCSVCGRGFTVNTILLRHMRVHSGERPYVCVTCGKAFSQSSTLNTHMKVHAPSPKTTESVSRMPKFHQQNDTGNRLMASNEPRLMPHHNSRLEADNRILTENDDARLLTSEASRLLAADNIRLLGTDTTRLLISDTTRLITNEGPRLLNVNENQRLLVGDNRLVTNDASRILPNDNTRQIVIENSRQLTIENSRILTDNVPDSFKIPEILGNMYGKKTKMLDLSFNSLITLQGLESFQNLEELILDNNQLSDTVQFPHLPFLHTLSLNKNNLINLETLILKISERIHNLSYLSLLGNRACPDQLSDIEKDQNDYQRYRYFVLYHIPTLKFLDSTRVTDTEKQEARRRGQFTKVVRPNDFETRLDNSIVISQFTPLPDSQRGYDDHKGAYGKCRYRYSGKHSEGNRFIFNNDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -