Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540817.1:22926942-22931240[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.026 1.4 9.7 0.7 1 23 16 39 16 39 0.96

2 15 0.011 0.59 10.8 0.9 1 23 45 67 45 67 0.93

3 15 6.5e-08 3.5e-06 27.3 0.9 1 23 73 95 73 95 0.99

4 15 2.9e-06 0.00015 22.1 2.2 1 21 101 121 101 122 0.97

5 15 0.72 38 5.1 0.0 2 23 285 306 284 306 0.94

6 15 0.0042 0.22 12.2 1.6 3 23 340 360 339 360 0.96

7 15 0.00012 0.0067 17.0 2.3 1 23 365 387 365 387 0.97

8 15 0.0032 0.17 12.5 0.4 2 23 394 415 393 415 0.97

9 15 0.00015 0.0082 16.7 0.7 1 23 421 443 421 443 0.97

10 15 1.6e-05 0.00085 19.8 0.4 1 23 449 472 449 472 0.97

11 15 5.8e-05 0.0031 18.0 2.4 2 23 484 505 484 505 0.97

12 15 0.0023 0.12 13.0 2.2 3 23 513 533 512 533 0.98

13 15 1.3e-05 0.00068 20.1 2.1 1 23 539 561 539 561 0.99

14 15 6e-07 3.2e-05 24.2 1.5 1 23 567 589 567 589 0.98

15 15 0.058 3.1 8.6 3.7 1 22 595 616 595 620 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.026	1.4	9.7	0.7	1	23	16	39	16	39	0.96
2	15	0.011	0.59	10.8	0.9	1	23	45	67	45	67	0.93
3	15	6.5e-08	3.5e-06	27.3	0.9	1	23	73	95	73	95	0.99
4	15	2.9e-06	0.00015	22.1	2.2	1	21	101	121	101	122	0.97
5	15	0.72	38	5.1	0.0	2	23	285	306	284	306	0.94
6	15	0.0042	0.22	12.2	1.6	3	23	340	360	339	360	0.96
7	15	0.00012	0.0067	17.0	2.3	1	23	365	387	365	387	0.97
8	15	0.0032	0.17	12.5	0.4	2	23	394	415	393	415	0.97
9	15	0.00015	0.0082	16.7	0.7	1	23	421	443	421	443	0.97
10	15	1.6e-05	0.00085	19.8	0.4	1	23	449	472	449	472	0.97
11	15	5.8e-05	0.0031	18.0	2.4	2	23	484	505	484	505	0.97
12	15	0.0023	0.12	13.0	2.2	3	23	513	533	512	533	0.98
13	15	1.3e-05	0.00068	20.1	2.1	1	23	539	561	539	561	0.99
14	15	6e-07	3.2e-05	24.2	1.5	1	23	567	589	567	589	0.98
15	15	0.058	3.1	8.6	3.7	1	22	595	616	595	620	0.93

Sequence Information

Coding Sequence: ATGGACTTAAATCATACAGATATGTACGATTCGATAGAAAACGGATTCAAATGTAAAGTATGCAACGCAATCACCGATACAAAGCAATCAATGTTGAGGCACGGTAACAAAGAACATGGCTCGATGTTGCCTTTCTTGTGCCATATTTGCGGGCAGGATTTCCTCAGAGAAAGCACGCTGAAAATGCACGCTACAGTCCACACTAGCGATACGCCTTTCAAGTGCGAGATTTGTTCGAAAGTGTTTAAAACGAAAGAAGCTTTGAGAATACACATAAAGACACATTCGTCTGAAAGACCTTACGTTTGTGAACATTGTGGATTTAACTATAAAAGAAGTTCGGCGTTGCAAAGGCACATGCGACATGTCAACTTCAGAAATATTACAATTAAACCAGATCCAGAAGAATTCGAACCGCTAGTAACAATTACCGAACTTcccataaaaaaacttaaaaaatctgGAGATCCTCGCAATTTAgaaaacgtaataaaaaaactgaaaagtcATTCGGATTCCGAAGACGACGATCTGACCTTAGCAAAACTCCAACTAGCTgcaaaatccaaaaaaaatacaaagcaAATCGGAACGAGGAAAAAATCAGTTCCCAAAAAAATCGGGACAAGGAAAAAGCGTAAAGAAAGCGATACAAACGaaaacaaacagaaaaaaacaaaGGAACTgtggacaaaaattaaagaagaaCCTGCCGATGAAAGTTACGAAGACGAGTATCAAAATCCTTTTAATTATGGGTTTGAGATACCCGCGAAACCAGCACGGAGGAGAAAACCGTTTAATAAATCGACACCTGTTCCGATAACCCAGTCAAAAATGAAATCGAAGTGGTCGTGTTTGATTTGTTTGGAAGATCTCGCATCGAAAGAAGCTTTGATAGCGCATTACGCTGTTCACAAAGACATTCCAATCAAACAGGAACACGAAACTGCAAACTATTCGGTCGGTTCTCACTTTCTAGAACTGACCAGAACCGGAGCGTCCCCCGTTCCGCATTGTCAAGTTTGCGGTAAGTCGGTCGAGACAGATAAAGACCTGCGCAAGCATTCGGAAACGCACATAGAGGAAAGATTCCACTGCGAGATATGCGATACGAGTTTCAAACGCGCGTACGAGTTTTCTATCCACTCGCGATTGCACACCGAGGAGCCGAAGCTCAAATGCGACATGTGCGATTATGAGACTATCTATAGGAGCGCCTTAGACACGCATTTGAAACGCCACGAGTCCGACTATAAGTACAAATGCGAAATTTGCGGAAAAGGTTTCTTTGTACAGTCATGGTACGAAGAACACAAAAACTTCCACACAGGTGCGAAGCCGTTCGTTTGTGAAATCTGTGATAAACCTTTCGCGTACACGAGATACCTGACGGCGCACAAGCGCAGCATGCACCCGGAGAGCTACAGAGACGAGCCTGTGGTGAACGAGTGCGAGATATGCCGCAAGCGTTTCGCGCACAAGAAGAGTCTGATGCTGCACATGAAAGGGCACACGGGCGAGAACACCGTGCTGTGCGATATCTGCGGCAAGCGGCTGTCGAGCAACGAACACCTCAAGTTCCACCGTCGGATCCACACGGGGTACAAACCGTACACATGCGACGTTTGCAGCAAAGGGTTCGCGAAGAAGTGCAACTTGACGCTGCATTTGCGGGTTCACAGCGGGGAAAAACCGTACGTCTGCGACGTGTGCGGTAAATGTTTCTCGCAGCGGTCGACGCTCGTTATACATGAGCGATACCACACAGGGCAAAGACCTTATACTTGCCATTTGTGTCACAAGGGCTTCGTGGCTAAGGGCGTTTTGAGTATTCATCTGAAGAGCTGTAACAGGCACACTATAATGGGTGGACTTGGTATTTTAGAATAA
Protein Sequence: MDLNHTDMYDSIENGFKCKVCNAITDTKQSMLRHGNKEHGSMLPFLCHICGQDFLRESTLKMHATVHTSDTPFKCEICSKVFKTKEALRIHIKTHSSERPYVCEHCGFNYKRSSALQRHMRHVNFRNITIKPDPEEFEPLVTITELPIKKLKKSGDPRNLENVIKKLKSHSDSEDDDLTLAKLQLAAKSKKNTKQIGTRKKSVPKKIGTRKKRKESDTNENKQKKTKELWTKIKEEPADESYEDEYQNPFNYGFEIPAKPARRRKPFNKSTPVPITQSKMKSKWSCLICLEDLASKEALIAHYAVHKDIPIKQEHETANYSVGSHFLELTRTGASPVPHCQVCGKSVETDKDLRKHSETHIEERFHCEICDTSFKRAYEFSIHSRLHTEEPKLKCDMCDYETIYRSALDTHLKRHESDYKYKCEICGKGFFVQSWYEEHKNFHTGAKPFVCEICDKPFAYTRYLTAHKRSMHPESYRDEPVVNECEICRKRFAHKKSLMLHMKGHTGENTVLCDICGKRLSSNEHLKFHRRIHTGYKPYTCDVCSKGFAKKCNLTLHLRVHSGEKPYVCDVCGKCFSQRSTLVIHERYHTGQRPYTCHLCHKGFVAKGVLSIHLKSCNRHTIMGGLGILE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -