Sful007223.1
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- Prdm9
- Assembly
- GCA_961205875.1
- Location
- OY540813.1:3376864-3381712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.014 0.77 10.5 0.6 1 21 293 313 293 314 0.95 2 27 4.5 2.4e+02 2.6 2.1 1 19 329 347 329 350 0.95 3 27 0.00044 0.024 15.2 1.2 1 23 412 434 412 434 0.98 4 27 3.6 1.9e+02 2.9 4.6 1 23 463 485 463 485 0.96 5 27 0.00044 0.024 15.2 0.4 1 23 491 513 491 513 0.98 6 27 0.0082 0.44 11.2 1.1 1 23 530 552 530 552 0.98 7 27 0.0034 0.18 12.4 0.8 1 23 558 580 558 580 0.98 8 27 0.00026 0.014 16.0 4.3 1 23 586 608 586 608 0.98 9 27 0.0025 0.14 12.8 0.2 1 23 614 636 614 636 0.98 10 27 0.014 0.75 10.5 3.2 1 23 642 664 642 664 0.97 11 27 0.00072 0.039 14.6 1.4 1 23 670 692 670 692 0.98 12 27 0.0033 0.17 12.5 0.7 1 23 698 720 698 720 0.97 13 27 0.00044 0.024 15.2 0.4 1 23 726 748 726 748 0.98 14 27 0.012 0.62 10.8 1.2 1 23 754 776 754 776 0.98 15 27 0.00029 0.015 15.8 2.1 1 23 782 804 782 804 0.98 16 27 0.014 0.75 10.5 3.2 1 23 810 832 810 832 0.97 17 27 0.00013 0.0069 16.9 1.5 1 23 838 860 838 860 0.98 18 27 0.11 6.2 7.6 0.2 1 23 866 888 866 888 0.97 19 27 0.076 4.1 8.2 3.4 1 23 894 916 894 916 0.98 20 27 0.0025 0.14 12.8 0.9 1 23 922 944 922 944 0.97 21 27 0.0015 0.082 13.5 0.2 1 23 950 972 950 972 0.98 22 27 0.014 0.75 10.5 3.2 1 23 978 1000 978 1000 0.97 23 27 0.00013 0.0069 16.9 1.5 1 23 1006 1028 1006 1028 0.98 24 27 0.11 6.2 7.6 0.2 1 23 1034 1056 1034 1056 0.97 25 27 0.076 4.1 8.2 3.4 1 23 1062 1084 1062 1084 0.98 26 27 0.0054 0.29 11.8 0.1 1 23 1090 1112 1090 1112 0.98 27 27 0.00015 0.0082 16.7 1.8 1 23 1118 1141 1118 1141 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTCGTTAGAAGTTACTTTACAGATGAGGAGTGGTCAGTTGTACCGAATTTAGATAAAATTCgttatgaaaatatgtatactATTTACATGGACATGAAGAAGCAAGGAGTTGAAATAGGTCTTCCAGAATTTATGGTTCCAAAGAAAAAAGTTAACAATTGTCTTTTGAATCGTAAAATTAAGAATTCTAATAATACTCAAAAGcgcAAAAGATCGTTTGCAAGAATCAGCGATTCGAATAGCGAACAACGATATCCGAagcgtaaaataaaaataattaactatgaAGAGACTCCGGATCTCAATGACGACCATTATCTatATTGCGACCGCTGCGAGAGAGAATACGAAAACGATTCTTGTCCCGTCCATGGCGCATACTTGATCGTTGATGATGACCCCATACCAGAAAATCTTAAAGTTAAAACTAGGGCTGAATACACAGCTCCCAGCAAGTGGGTCAAAATTGGACCTTCTAAAATCCCTAATGCTGGGAAAGGCGTGTTCAGTGTCCAGTTTATCCCACCCGGAGTGAGGTTTGGGCCTTACATAGGGAAGAAGACCACTCTCGGGAATGATATTGGCTACTGTTGGAAGCTTCGTGTCAGTAATCAAGCGTCTTGTTTCATTGACGGATACAACGAGAATATTTCGAACTGGATGCGGTATGTGAATACTCCGAGGAACGTCAAAGAGCAAAACCTGATGGCTTTTCAGTATTGCGGGAAGATTTACTACCGGACGGTTTGTGATATTGCGCCAGATACTGAACTGCTGGTAAACTACGGGAATGACTTTCTCAAAAAACTTAAGATTGATACCAAAGAGTTTTATATTTCTTGGAAACAGCCTGTGGTTAAAGACGCTGTACACAAGTGTGTCTATTGTAACATAGGATTTGTTGCTTCTTCCTATCTCGAGCAgcattataaatattgtaaaaagaagaagaagagtCTATTTGATACAAGCAAAAAATACGTCTGCGAGCCGTGCCGTTTGTCCTTCTCTACCGAGAAATACCTACTGGAACACTGCCATCGCTGTCGCCAATTCAGAGCTGAGTGTTACACAGCCGACAGCAACACATCAACAGATTACAGTGATCTAGATACACTCAGCGAACAATCTTCATCCAGAGAGAATGATATAGAACAGAATACAGAGTGTGTAAAGAGTGCTAACGATAGCTGTATGAGTGACATTGACAACGCTGGCAAACATGTGTACAGCTGCGACACTTGCGATTACACTACAAACAAGTCAGATACACTCACAATACACAAACGTATACATACCGCCGTACGCCTTCATGGTTGTGACCAGAGTGAACATAGCGCAGCTGATTTAGATAATCTAACAAGACATAAACGCATTGAATATTCTTGTGACCAGTGTGATTATAAGACAAGTTGTTCTAATATCCTAACAAGACATAAGCGCACACACACAGGCGAACGAACTTATGCGTGTGATCAGTGTGATTACAAGACAGCTCGTTCTGATACCCTAATAAGCCACAAGCGCATACATACTAGTTATTTACCAGTATACAAGCGCACACATACCGGTGAATTCCCTTATGCTTGTGATATGTGTGAATACAGATCAACTTATATTAATTCACTTAAAAGACACAAGCGCATACATACCGGCGAACTGCCTTATGCTTGCGATTTGTGTGATTACAGGGCAGCTCAATCTAGTTGTCTAACAATACACAAGCGCATACACACTGGCGAACTACCTTATGCTTGTGACCAGTGTGATTATAGGACAGCTCATTCTGGTCATCTAACAAGACACAAGCGTACACACACTGGAGAACTACCTTATGCTTGTGATATGTGTGAATACAGAGCAGCTCAATCTAGTCTTCTAACAACACACAAGCGCATACACACTGGCGAACTACCTTATGCTTGTAATATGTGTGATTACAGAGCAGCTCATTCTGGTAATTTAACAACACACAAGCATAAACACACTGGAGAACTACCTTATTCTTGTGACCAGTGTGAATACAGAATAGCTAATTCTAGTCATCTAACAATACACAAGCGCATACACACTGGAGAACTACCTTATTCTTGTGATATGTGTGAATATAGAGCAGCTCGTTCTGATTCACTTAAAAGacacaaatacatacataccgGTGAATTACCTTATGCGTGTGATCAGTGTGATTACAAGACAGCTCGTTCTGATACCCTAATAAGCCACAAGCGCATACATACCGGCGAACTACCTTATGCTTGCGATTTGTGTGAATATAGGGCAGCTCAATCTAGTTGTCTAACAACACACAAGCGCATACACACTGGAGAACTACCTTATTCTTGTGACCAGTGTGAATACAGAACAGCTAATTCTAGTCATCTAACAATACACAAGCGCATACACACTGGCGAACTACCTTATGCTTGTAATATGTGTGATTACAGAGCAGCTCATTCTGGTAATTTAACAACACACAAGCATAAACACACTGGAGAACTACCTTATTCTTGTGACCAGTGTGAATACAGAACAGCTAATTCTAGTTATCTAACAAGACACAAGCGCGTACACACTGGAGAACTACCTTATGCTTGTGATATGTGTGAATATAAGGCAGCTGAATCTGGTAGATTAACAAAACACAAGCGCATACACACCGGCGAACGTCCTTATTCTTGTGACCAGTGTGAATATAAGACAGCTTGTTCTAGTAGTCTAACAAGACACAAGCGCGTACACACTGGAGAACTACCTTATTCTTGTAATATGTGTGAATATAGAGCAGCTCGTTCTGATTCACTTAAAAGacacaaatacatacataccgGCGAACTGCCTTATTCTTGCGATTTGTGTGATTACAGGGCAGCTCAATCTGGTAGTCTAACAATACACAAGCGCATACACACTGGCGAACTACCTTATGCTTGCAATATGTGTGATTACAGAGCAGCTCATTCTGGTAATTTAACAACACACAAGCATAAACACACTGGAGAACTACCTTATTCTTGTGACCAGTGTGAATACAGAACAGCTAATTCTAGTTATCTAACAAGACACAAGCGCGTACACACTGGAGAACTACCTTATGCTTGTGATATGTGTGAATATAAGGCAGCTGAATCTGGTAGATTAACAAAACACAAGCGCATACACACCGGCGAACGTCCTTATTCTTGTGACCAGTGTGAATATAAGACAGCTTGTTCTAGTAGTCTAACAAGACACAAGCGCGTACACACTGGAGAACTACCTTATGCTTGTGATATGTGTGAATATAAGGCAGCTGAATCTGGTAATTTAACAAAACACAAGCGCATACACACCGGTGAACGTccttatgcgtgtaacaagtgTGATTATAGGACAGCTCATTCTAGTTCACTTAAAACACATATTAAACTCATTCACGAACAAAGTGACGACAAACATTAA
- Protein Sequence
- MEVVRSYFTDEEWSVVPNLDKIRYENMYTIYMDMKKQGVEIGLPEFMVPKKKVNNCLLNRKIKNSNNTQKRKRSFARISDSNSEQRYPKRKIKIINYEETPDLNDDHYLYCDRCEREYENDSCPVHGAYLIVDDDPIPENLKVKTRAEYTAPSKWVKIGPSKIPNAGKGVFSVQFIPPGVRFGPYIGKKTTLGNDIGYCWKLRVSNQASCFIDGYNENISNWMRYVNTPRNVKEQNLMAFQYCGKIYYRTVCDIAPDTELLVNYGNDFLKKLKIDTKEFYISWKQPVVKDAVHKCVYCNIGFVASSYLEQHYKYCKKKKKSLFDTSKKYVCEPCRLSFSTEKYLLEHCHRCRQFRAECYTADSNTSTDYSDLDTLSEQSSSRENDIEQNTECVKSANDSCMSDIDNAGKHVYSCDTCDYTTNKSDTLTIHKRIHTAVRLHGCDQSEHSAADLDNLTRHKRIEYSCDQCDYKTSCSNILTRHKRTHTGERTYACDQCDYKTARSDTLISHKRIHTSYLPVYKRTHTGEFPYACDMCEYRSTYINSLKRHKRIHTGELPYACDLCDYRAAQSSCLTIHKRIHTGELPYACDQCDYRTAHSGHLTRHKRTHTGELPYACDMCEYRAAQSSLLTTHKRIHTGELPYACNMCDYRAAHSGNLTTHKHKHTGELPYSCDQCEYRIANSSHLTIHKRIHTGELPYSCDMCEYRAARSDSLKRHKYIHTGELPYACDQCDYKTARSDTLISHKRIHTGELPYACDLCEYRAAQSSCLTTHKRIHTGELPYSCDQCEYRTANSSHLTIHKRIHTGELPYACNMCDYRAAHSGNLTTHKHKHTGELPYSCDQCEYRTANSSYLTRHKRVHTGELPYACDMCEYKAAESGRLTKHKRIHTGERPYSCDQCEYKTACSSSLTRHKRVHTGELPYSCNMCEYRAARSDSLKRHKYIHTGELPYSCDLCDYRAAQSGSLTIHKRIHTGELPYACNMCDYRAAHSGNLTTHKHKHTGELPYSCDQCEYRTANSSYLTRHKRVHTGELPYACDMCEYKAAESGRLTKHKRIHTGERPYSCDQCEYKTACSSSLTRHKRVHTGELPYACDMCEYKAAESGNLTKHKRIHTGERPYACNKCDYRTAHSSSLKTHIKLIHEQSDDKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -