Sful000989.3
Basic Information
- Insect
- Sialis fuliginosa
- Gene Symbol
- -
- Assembly
- GCA_961205875.1
- Location
- OY540809.1:23691814-23696529[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 2.3 9.0 0.7 1 22 96 117 96 120 0.89 2 13 0.00018 0.0096 16.5 2.3 1 23 120 143 120 143 0.96 3 13 3.1e-05 0.0017 18.9 2.0 1 23 149 171 149 171 0.97 4 13 8.5e-06 0.00046 20.6 3.7 1 23 177 199 177 199 0.96 5 13 0.00012 0.0065 17.0 2.5 3 23 207 227 205 227 0.96 6 13 1.3e-05 0.00068 20.1 0.2 1 23 233 255 233 255 0.99 7 13 2.2e-05 0.0012 19.3 0.2 1 23 261 283 261 283 0.99 8 13 2.1e-06 0.00011 22.5 2.0 1 23 289 311 289 311 0.99 9 13 4.3e-05 0.0023 18.4 0.2 1 23 317 339 317 339 0.96 10 13 6.4e-05 0.0035 17.9 0.2 2 23 349 370 348 370 0.97 11 13 5.7e-06 0.00031 21.2 0.6 1 23 376 398 376 398 0.98 12 13 1.4e-07 7.8e-06 26.2 1.3 1 23 404 426 404 426 0.98 13 13 5.5e-08 3e-06 27.5 1.2 1 23 432 454 432 454 0.96
Sequence Information
- Coding Sequence
- ATGGAGTGCGCTTCTGTTAatatcAAAGAAGATGACGGATTACCAGAAAATATatgtgaaaaatgtataaaaacattacacgaaagttataaatttaaaaaagtatgcGAAAAATCAGATGAGCTTCTAAGAAAAAAACTTATTGTTGATTTTGTATCAAATGAAGAAAAATCAGTAATTAATGAAACTAATATTTATTCTATAATGCCTACAGAAAGTAATATAActgataataatatacaaataatatttgccAATTTAATATCAAATCAAAAAGAATCATTATTTGTATGTAACATTTGCATGACAGAATTTTATTCTAGTAACGATCTGCAAGAACATAACTGTAAAGAAAAACATTCATGTACTATTTGCAATCAAGAATTCAATtcgaaacaaaaattatctcaACATTTAAAATCACAGCACACAAATGTACTAcaatataattgtaataattgtGGAAAACTCTTCAGTTCGTTGTTTTCGTTGAAACGCCATTCTAAAATTCATCTTGTAGAAAAGTCACATGCTTGTCAGATATGCAATAAGAATTTTTATAACTACAGTGAtcttaataaacatttaaaaaggcATAGAGGAGATAAGAAACATCTGTGTACGATTTGTGGGAAACGTTtctttgaaaataatgttttgacTACACATATGAGAAGTCATACTGGAGaaaaaccttttaaatgtaaGGTTTGTTCAAAAGCTTTTGCAGCAAGTAGTCAAGTTGAAGTACACATGAAAATTCACTCCGGTGTAAAACAGTATGTTTGTGATATTTGTGAAATGTCTTTTGCTGTCCGATGGTATTTGAAGATTCATAAACGGACACATACTGGAGAAAAACCATATCAGTGtcagGTATGTGAAAAACGTTTCTCTCACGGAGGCACTTTACGTGTCCACATGAGATCTCATACAGGGGAAAGACCATATCTTTGTACCGAATGTGGGCAGGGCTTCGTCACATCTGAGAAGGCACAGATACACATGCGGAAGCATACAggtgaaaaaacaaaaatgcgTGTCATGTGTAGCATATGCGgtaaacagtttttaaaaccatcggACTTACGAATACATGAAAGGACTCATACAGGAGAAAAACCGTTTGTCTGTAAAACTTGTGGGAAGGCATTCCTGACTTCAGGCAACTTAACGTCACATACCCGCATTCATACAGATGTGCGTCCGTACACGTGCACTGTGTGTAACAAATCGTTCAGGGAATCGTCTAACCTCAAAGCTCATTCTCGTATTCACTCTGGCTTAAGACCGTACCTGTGTAAGATATGTAATAAGTCTTTTACTCAGAGTGGTGCTTTGACTTCTCATATGAAAACACATTGA
- Protein Sequence
- MECASVNIKEDDGLPENICEKCIKTLHESYKFKKVCEKSDELLRKKLIVDFVSNEEKSVINETNIYSIMPTESNITDNNIQIIFANLISNQKESLFVCNICMTEFYSSNDLQEHNCKEKHSCTICNQEFNSKQKLSQHLKSQHTNVLQYNCNNCGKLFSSLFSLKRHSKIHLVEKSHACQICNKNFYNYSDLNKHLKRHRGDKKHLCTICGKRFFENNVLTTHMRSHTGEKPFKCKVCSKAFAASSQVEVHMKIHSGVKQYVCDICEMSFAVRWYLKIHKRTHTGEKPYQCQVCEKRFSHGGTLRVHMRSHTGERPYLCTECGQGFVTSEKAQIHMRKHTGEKTKMRVMCSICGKQFLKPSDLRIHERTHTGEKPFVCKTCGKAFLTSGNLTSHTRIHTDVRPYTCTVCNKSFRESSNLKAHSRIHSGLRPYLCKICNKSFTQSGALTSHMKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01344221;
- 90% Identity
- -
- 80% Identity
- -