Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540817.1:22911768-22914478[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.5e-05 0.0024 18.3 2.9 1 23 22 45 22 45 0.96

2 19 6.6e-05 0.0036 17.8 2.7 1 23 50 72 50 72 0.98

3 19 0.00066 0.035 14.7 2.9 2 23 79 101 78 101 0.94

4 19 0.00016 0.0088 16.6 2.1 1 23 107 129 107 129 0.99

5 19 3.4e-05 0.0018 18.7 1.1 1 23 133 155 133 155 0.98

6 19 5.3e-06 0.00029 21.3 1.2 1 23 162 184 162 184 0.97

7 19 9.1e-06 0.00049 20.5 2.3 1 23 190 212 190 212 0.99

8 19 2.5e-06 0.00014 22.3 1.6 1 23 218 240 218 240 0.98

9 19 0.0054 0.29 11.8 0.3 1 20 246 265 246 266 0.94

10 19 1.8e-05 0.00094 19.6 1.1 2 19 291 308 290 311 0.93

11 19 0.00013 0.007 16.9 1.9 1 21 322 342 322 343 0.96

12 19 6.5e-05 0.0035 17.8 1.6 1 23 350 372 350 372 0.99

13 19 0.0075 0.41 11.4 0.1 2 23 379 401 378 401 0.94

14 19 7.9e-06 0.00042 20.7 1.3 1 23 408 430 408 430 0.99

15 19 4.2e-05 0.0023 18.4 2.3 1 23 439 461 439 461 0.98

16 19 1.8e-05 0.00096 19.6 2.4 1 23 468 490 468 490 0.96

17 19 0.0011 0.058 14.0 3.6 1 23 496 518 496 518 0.99

18 19 1.8e-05 0.00095 19.6 1.3 1 23 524 546 524 546 0.98

19 19 0.0013 0.069 13.8 0.8 1 23 552 575 552 575 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.5e-05	0.0024	18.3	2.9	1	23	22	45	22	45	0.96
2	19	6.6e-05	0.0036	17.8	2.7	1	23	50	72	50	72	0.98
3	19	0.00066	0.035	14.7	2.9	2	23	79	101	78	101	0.94
4	19	0.00016	0.0088	16.6	2.1	1	23	107	129	107	129	0.99
5	19	3.4e-05	0.0018	18.7	1.1	1	23	133	155	133	155	0.98
6	19	5.3e-06	0.00029	21.3	1.2	1	23	162	184	162	184	0.97
7	19	9.1e-06	0.00049	20.5	2.3	1	23	190	212	190	212	0.99
8	19	2.5e-06	0.00014	22.3	1.6	1	23	218	240	218	240	0.98
9	19	0.0054	0.29	11.8	0.3	1	20	246	265	246	266	0.94
10	19	1.8e-05	0.00094	19.6	1.1	2	19	291	308	290	311	0.93
11	19	0.00013	0.007	16.9	1.9	1	21	322	342	322	343	0.96
12	19	6.5e-05	0.0035	17.8	1.6	1	23	350	372	350	372	0.99
13	19	0.0075	0.41	11.4	0.1	2	23	379	401	378	401	0.94
14	19	7.9e-06	0.00042	20.7	1.3	1	23	408	430	408	430	0.99
15	19	4.2e-05	0.0023	18.4	2.3	1	23	439	461	439	461	0.98
16	19	1.8e-05	0.00096	19.6	2.4	1	23	468	490	468	490	0.96
17	19	0.0011	0.058	14.0	3.6	1	23	496	518	496	518	0.99
18	19	1.8e-05	0.00095	19.6	1.3	1	23	524	546	524	546	0.98
19	19	0.0013	0.069	13.8	0.8	1	23	552	575	552	575	0.96

Sequence Information

Coding Sequence: ATGTTCGAAGACAATATCGAACGCAAGCTTCACCGCGAGACAGCTCACGACACAGAATTTCCTTTTAAGTGCAAACTATGCGACAAAAGTTacgaaaaaaagttcaaattgaACAAACACATAAACGGTACCCACATGGAACGAAAATTCAAATGCGAAATATGTTTCCATGCATTTCCAACAAACGAAAAACTAGAAAGGCACCGTCAAAGACATTTCAATCAATTTGTATGTTACTGTGAACACTGTTCTAAAGGATTTTACAACGCGTCAGAAATGAAAACACATATAGATTCAGTCCACAGCGTCGAGCGTAAATATCAATGTGACCTATGCCCTAAAACGTTTGCAGCTAGGAAATACTTCATGTCCCATAAAAGAAAGCATGAGAAACTGTTTCAATGCTCGTTTTGTGATAACAGATACCCCACAAAGGAATCCCTAGAAAGACATTTGAGAGAGCATACAGGCGAAGCGCCTAAGTACATGTGCCACGTTTGTGGTAAAACTCTAACAAGTAAAGACAGTTTAAGAGATCACCTTCTACTGCACAAGGGCGAAAAACCGTATAAGTGTGATCTTTGTGATAAGAGATTCAGTAAGAAAAAGAATATAACTGTGCATCGTATAACTCATACTGGAGAGAAACCTCATAAGTGTCCGTATTGTGATAAGTCGTATTCGCAACGGACGCCACTGACTTTGCATATCAGAGGGCATACCGGAGAAAAACCGCATAAGTGTAACCTCTGCGATGAGGCATTCGTTAGCAGACAGCTTCTCGATGCTCATAAGTCACCGCTGACACAAAATATAGACACTTGGTCAGAAAACAGTTTCCTGTTGAACTCAATCGCAAAGAATTCTACAACATGTCCTTTATGTAATAAAACGTTTTCAAACCGAAGTCAGTTTAATAAGCATGGATACACAACACGCAAATCGAAACAATCAAAACTCTCTTTTAAATGCAAAGTGTGCAGCAAAGCGTTTAAACTAGCGTGCCAATTAAAAAGACACATACAAGATTGTCGCTCGAAGCGAGAATTCAAATGCGAAATCTGCTCTAAACAGTTTCCAAATAAGTTTAAAGTGATCGCGCACCGCAGAAGGCATTTTAACGAATACACAATGTATTGTGACCAATGTTCCAAAGGCTTTTACGGAAATGCAGAGTTGAGGTTACACGTAGAAGTCTATCACAACGATAATAAACCTGAGTACAAATGTGACATTTGCTCTAAAGTATTTGCAGCAAGCACTTACCTTCGTACGCATAGAAAAACACACGATAACTATTTCTTACCTAAAACTTTTGAATGCACTCTGTGCAATAAGAAATACGCAAGGAAGTTTTTGCTCAGTAGACATGTTAAGTCACATTCTGAAGAGAAACCGCAACACGTGTGCCACATTTGCGGTAAGACGGTGACGAGTAAAACAAGTCTACGAGACCATCTTCTGCTGCATTCGGGAGAGAAGCCGTTCAAGTGTGATTTCTGCGAGAAGCGATTCACCAAGAGAAAGGTTATGTTGGTACATCGTAGAACTCATACAGGAGAAAAACCGCACAAGTGCCCGTTCTGTGATATGTCGTTTTCGCAACGGACGCCGTTGACTTTGCATATTCGAGGGCATACCGGAGAAAGGCCGTTTAAGTGTACTCTCTGCGATGTGGAATTCGTTAGCAGACAGATGCTGGAAACTCATAAGACTAAAGAGCATATGactcttaaaattgaaaaaccaGATACTTGTTTTAATTAA
Protein Sequence: MFEDNIERKLHRETAHDTEFPFKCKLCDKSYEKKFKLNKHINGTHMERKFKCEICFHAFPTNEKLERHRQRHFNQFVCYCEHCSKGFYNASEMKTHIDSVHSVERKYQCDLCPKTFAARKYFMSHKRKHEKLFQCSFCDNRYPTKESLERHLREHTGEAPKYMCHVCGKTLTSKDSLRDHLLLHKGEKPYKCDLCDKRFSKKKNITVHRITHTGEKPHKCPYCDKSYSQRTPLTLHIRGHTGEKPHKCNLCDEAFVSRQLLDAHKSPLTQNIDTWSENSFLLNSIAKNSTTCPLCNKTFSNRSQFNKHGYTTRKSKQSKLSFKCKVCSKAFKLACQLKRHIQDCRSKREFKCEICSKQFPNKFKVIAHRRRHFNEYTMYCDQCSKGFYGNAELRLHVEVYHNDNKPEYKCDICSKVFAASTYLRTHRKTHDNYFLPKTFECTLCNKKYARKFLLSRHVKSHSEEKPQHVCHICGKTVTSKTSLRDHLLLHSGEKPFKCDFCEKRFTKRKVMLVHRRTHTGEKPHKCPFCDMSFSQRTPLTLHIRGHTGERPFKCTLCDVEFVSRQMLETHKTKEHMTLKIEKPDTCFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -