Basic Information

Insect: Sialis fuliginosa
Gene Symbol: -
Assembly: GCA_961205875.1
Location: OY540812.1:1344106-1345866[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0003 0.016 15.8 1.2 1 23 104 126 104 126 0.97

2 17 4e-05 0.0022 18.5 4.2 1 23 141 163 141 163 0.99

3 17 8.3e-07 4.5e-05 23.8 5.1 1 23 169 191 169 191 0.98

4 17 1.4e-06 7.5e-05 23.1 0.5 1 23 197 219 197 219 0.94

5 17 3.1e-07 1.7e-05 25.1 1.6 1 23 225 247 225 247 0.98

6 17 5.1e-06 0.00027 21.3 0.7 1 23 253 275 253 275 0.98

7 17 2.7e-06 0.00015 22.2 0.3 1 23 281 303 281 303 0.94

8 17 0.00024 0.013 16.1 4.6 3 23 311 331 309 331 0.98

9 17 4.3e-07 2.3e-05 24.7 1.5 1 23 337 359 337 359 0.98

10 17 3.5e-07 1.9e-05 25.0 3.3 1 23 365 387 365 387 0.98

11 17 2.8e-06 0.00015 22.1 2.1 1 23 393 415 393 415 0.98

12 17 1.4e-05 0.00076 19.9 2.1 1 23 421 443 421 443 0.97

13 17 5.9e-07 3.2e-05 24.3 4.9 1 23 449 471 449 471 0.97

14 17 0.00069 0.037 14.6 6.4 1 23 477 499 477 499 0.98

15 17 0.014 0.75 10.5 3.0 1 23 505 527 505 527 0.92

16 17 1.5e-06 7.9e-05 23.0 0.1 1 23 533 555 533 555 0.95

17 17 2.6e-07 1.4e-05 25.4 1.2 1 23 561 583 561 583 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0003	0.016	15.8	1.2	1	23	104	126	104	126	0.97
2	17	4e-05	0.0022	18.5	4.2	1	23	141	163	141	163	0.99
3	17	8.3e-07	4.5e-05	23.8	5.1	1	23	169	191	169	191	0.98
4	17	1.4e-06	7.5e-05	23.1	0.5	1	23	197	219	197	219	0.94
5	17	3.1e-07	1.7e-05	25.1	1.6	1	23	225	247	225	247	0.98
6	17	5.1e-06	0.00027	21.3	0.7	1	23	253	275	253	275	0.98
7	17	2.7e-06	0.00015	22.2	0.3	1	23	281	303	281	303	0.94
8	17	0.00024	0.013	16.1	4.6	3	23	311	331	309	331	0.98
9	17	4.3e-07	2.3e-05	24.7	1.5	1	23	337	359	337	359	0.98
10	17	3.5e-07	1.9e-05	25.0	3.3	1	23	365	387	365	387	0.98
11	17	2.8e-06	0.00015	22.1	2.1	1	23	393	415	393	415	0.98
12	17	1.4e-05	0.00076	19.9	2.1	1	23	421	443	421	443	0.97
13	17	5.9e-07	3.2e-05	24.3	4.9	1	23	449	471	449	471	0.97
14	17	0.00069	0.037	14.6	6.4	1	23	477	499	477	499	0.98
15	17	0.014	0.75	10.5	3.0	1	23	505	527	505	527	0.92
16	17	1.5e-06	7.9e-05	23.0	0.1	1	23	533	555	533	555	0.95
17	17	2.6e-07	1.4e-05	25.4	1.2	1	23	561	583	561	583	0.98

Sequence Information

Coding Sequence: atgtcTAATTTTGAtgctgtaaatataaaaatagaaccGCAAGATCCCGAAGAAGAGTTAAAAAATCAAGATGTAGAATTGAATTTGATCAAATGTAAAAGCGAACCACCTGAATACGATGAAAATGTCATTAAAGTTCCTAACattaaatctgaaaatatttatttacctgaaaatataaaagaagaaaactCGGAGGAAGTTTCCGAACACAGTAATTTAAATTCTAATGTTACCTCAAATTCTTATTCTGAAAACTATCTCAACTGTGAAGTTGTGATAGAAGAATCCGATCGTACGAAAACTAACTTTGTTTGTGATATTTGTACAGAAATCTTCACACAGAAATGTGATTTAGACAGGCATGTCTCAAACCATTTAGATAAGAACGATTTAAAAACACCATCCGAAGATCGCCCTTTTAAATGTAACATCTGCGAAAAATCATATTCAAAAAAGAATCATCTAGACAATCACACACTGACGCACTCCGGCGAGAGAAACTTTAAATGTGATATATGTAACAAAACCTTCTACACGAAAGGGCACTTGAAAAGGCACTACCTATCGCATTCTggtgaaaaaaatttcaaatgcgAAATATGCGGTaaaatgttttctcaaaacacggAATTAAAAAGCCACTCGGTAATACACTCGACCGAAAAACCCTTCAAGTGTAACGTGTGCGACAAAGAATTCTCGTTCAAAAGCAATCTGAAAGTCCACTACTTGATACATTCAGGCGAACGTAAATTTAAATGTGACGTCTGCAACAAAACGtttgtattaaaaaacaatttacggATCCACGCACTGACCCATTCCAGAGAAAGACAGTTCGCTTGCGATATATGCGGGAAGATATTTATACGTAAGGACCATTTAAAAATTCACAGTGCCGTGCATTCTGACGCAAAACCGTTCGGTTGTGATCTGTGCGGGAAACACTATTCCCTCAAGTGCGATTTGAGAAAACACATGATGACTCATTCCGGTGAGAAATCATTCAAATGCGAACTCTGCGAGAAAGCGTTTTATCGGAGAAGTTACCTAAACAAACATATGTTAATCCACTCCGGACAAAAGCCGTTTAAATGTGAATTATGCGAAAAGAGTTTTACATCGAAGAGCAGTTTGAATAAACACACAAAATCCCATTCCGATGAAAAGGAATTCGAATGTGAAATCTGCGGGAAGAAGTTTGCGTATAACTGTAATTTAAAAGATCATCTATTGAAGCACACGAGCAGAAATCCGTTCAGTTGTGATATCTGCGGGAAGACGTTTTCGTTAAAATGCACTTTGAACAGACACGCTTCGATTCACACCGGGGAATTACTATTCGATTGCGAAGTTTGCTCGAAGAAGTTCTCTCATAAAGAATACCTAAAGAAGCATATGCGTACGCACACCGTCGAAAGACAGTTTGAATGCGACGTTTGCTTTAAGAAGTTCTTCCACGGTAACCATTTGAAGAAACACATGCTGACGCATTCTACGGAAAGGCCTTTCGAATGTACCGTCTGCAGTAAGAGGTTCTCGTGTAAGGAGTATTTAAAGAACCATGCCGTTCTACATTCCGATGAGAAGCCGTTTGAATGCGGTGTTTGCGGGAAGGCGTTTTCGCAGAAAGCGTCGTTGACGAAACACGCTGTCGTACATACCGACGAACAGCCGTTCGAGTGTAACGTATGCGGGAAGAAATTCTCTAGGAAAAATAATCTAGATAGACATACTTTGATACATACGACAAAATAA
Protein Sequence: MSNFDAVNIKIEPQDPEEELKNQDVELNLIKCKSEPPEYDENVIKVPNIKSENIYLPENIKEENSEEVSEHSNLNSNVTSNSYSENYLNCEVVIEESDRTKTNFVCDICTEIFTQKCDLDRHVSNHLDKNDLKTPSEDRPFKCNICEKSYSKKNHLDNHTLTHSGERNFKCDICNKTFYTKGHLKRHYLSHSGEKNFKCEICGKMFSQNTELKSHSVIHSTEKPFKCNVCDKEFSFKSNLKVHYLIHSGERKFKCDVCNKTFVLKNNLRIHALTHSRERQFACDICGKIFIRKDHLKIHSAVHSDAKPFGCDLCGKHYSLKCDLRKHMMTHSGEKSFKCELCEKAFYRRSYLNKHMLIHSGQKPFKCELCEKSFTSKSSLNKHTKSHSDEKEFECEICGKKFAYNCNLKDHLLKHTSRNPFSCDICGKTFSLKCTLNRHASIHTGELLFDCEVCSKKFSHKEYLKKHMRTHTVERQFECDVCFKKFFHGNHLKKHMLTHSTERPFECTVCSKRFSCKEYLKNHAVLHSDEKPFECGVCGKAFSQKASLTKHAVVHTDEQPFECNVCGKKFSRKNNLDRHTLIHTTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01344203;
90% Identity: iTF_01344203;
80% Identity: -