Sver019568.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Shargacucullia verbasci
Gene Symbol
nfxl1
Assembly
GCA_947562105.1
Location
OX387304.1:9524699-9527170[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 2 2.2e+04 -7.8 5.6 15 19 134 138 133 138 0.81
2 19 0.01 1.1e+02 3.2 0.3 4 10 169 175 168 176 0.97
3 19 3.1e-07 0.0034 17.7 15.9 3 19 186 202 185 202 0.95
4 19 4.8e-08 0.00052 20.2 12.9 3 19 239 255 237 255 0.92
5 19 0.87 9.5e+03 -2.9 1.9 6 10 280 284 279 284 0.87
6 19 1.6e-09 1.8e-05 24.9 14.5 1 19 290 308 290 308 0.99
7 19 2.3e-06 0.025 14.9 19.8 3 19 345 361 337 361 0.86
8 19 1.1 1.2e+04 -3.3 0.5 7 11 365 369 365 369 0.87
9 19 2 2.2e+04 -5.3 2.2 5 10 384 389 384 389 0.88
10 19 4.9e-05 0.53 10.6 16.9 1 18 395 412 395 413 0.97
11 19 4.5e-10 4.9e-06 26.7 14.0 1 19 422 440 422 440 0.99
12 19 0.0002 2.2 8.6 6.4 9 19 488 498 486 498 0.89
13 19 0.0043 47 4.4 6.9 1 12 508 518 508 518 0.90
14 19 0.35 3.8e+03 -1.7 3.6 14 18 547 551 547 552 0.87
15 19 0.7 7.7e+03 -2.7 0.1 8 12 568 572 567 573 0.80
16 19 9.1e-06 0.099 13.0 5.3 1 11 588 598 588 599 0.97
17 19 2 2.2e+04 -6.0 3.3 6 7 616 617 612 620 0.50
18 19 0.0045 50 4.3 14.8 4 18 630 645 628 646 0.82
19 19 2.1e-06 0.023 15.0 12.2 1 18 687 705 687 706 0.89

Sequence Information

Coding Sequence
ATGGCGCGTAGATATCGAGACGCTGCTGCAAAATTGCAGTTAAATGTTCAGAAACATTTAAATGAAATGAAAGAACTATCATCATCAGAAGACGAGGATCCTTGCGAGTCCAGCGTTCTTGATGGAGTGTTCCAGAGCTATTGGCGTGGTGGTGGAGATACTCATATGCTGAACAGAACTAAAAATCTCCTGGAGGAAGCCATAAGCGGCCGCGCTGTGACCTGTCTAATATGCATAGGATCAATCAAAAAAATTCATCCTATATGGACCTGTGATCATTGTTATTCCTATTTCCATCTGTCTTGTATACAAAAATGGGCTAACGACAGTATAAGCTTGCGTTGTGAAGAAACTCAGGGCCCAATAACTGTATTTAAACACCAAAAAATTGAATGGTGCTGTCCAAAGTGCCGACAGTCATATTCTAAGGAAGAAATACCGCGTAAATATCGCTGTTTTTGTGGTAAGACTGATGACCCTCCTCACCATCCATGGCTTCTTCCGCACACTTGTGGAGAGGTCTGTGGAAAAAGGCTGTCAGCTGGTGACAGCTGCAAACATAAGTGCTTGCTTCTTTGTCATCCTGGACCTTGTCCACCATGTCCTCAAACTGTTAATGGAATATGTTTTTGTGAAAAAGAACATAAGAGAGTGAGATGTAGCGCTGCCAAATGGTCTTGTGGGCAAATATGTAAAAAACAACTGCTATGTAAAAGTCACAAATGTGAAAATGTCTGCCATGAAGGAGACTGCCCTCAGTGCAGCTACACCAGTGTTCAGCCATGCCAGTGTGGCTCTGAGAAAGCCAAAAGACCATGCAGTGATCCATTTTGGCAGTGTGAAAAGCCATGTAACAAATTATTCTCATGCGGCTACCATAAATGTGACAAAACCTGCCATGCAGGCAACTGTGGGCCCTGCCCTAACTCCGGAATGACAACATGTCCATGTGGAGCCAATCAGCGCTTTGTACAATGTCCAGATGTTATGGAAACCTGCTTAGGAACATGTGGCAGAAAGCATGAAGACTGTGAACACAACTGCCCAGAAAAATGCCATAAGGGACCATGCCCACCTTGCCAAGTGTTAGTGCAAAAGAAATGCCACTGCTCAACTCATACTAGGTCCTTGCCATGCAGCAAGGATTTCAAATGTGAGACAAAATGTAGGGGAATAAGACCATGCAGTAAACATGGATGTGCAAGAAAATGCTGCAATGGTAATTGCCCTCCATGTGAAAAAATCTGTGACAAGCCTCTCCAGTGTGGAAGGCATAAATGCACAAATATTTGCCACCGGGGACCATGCTACCCATGCCCTAGAGAATCTAAAGTGACTTGTAGGTGTAAGGAAACTTATGTAACAGTCCCATGTGGAAGGGAACGTCAGACAAAACCTCCAAAATGCAACTTACCTTGCAAAATTAAATATAAATGTGGTCATAGTGAGGAAAACAAGCACTCCTGCCATTTCGGTGACTGTCCTCCATGCAAAGCGATTTGCTACAAACAATATCCAAAGTGTAGCCATCAATGTAAAGCTGTGTGCCATGAATATGTTGCAGTGCTCTTCAAACAAGTTGAAAAGCCTGCTACTCCATGGGAAGTGCAACCACCAAAGACCAAAATAATGACCTTAGATTGTCCTCCATGTGACACACCAATACCAATTGTTTGTTTTGGAGAACATGAGACAGACAATCAGGCTTGCCACTCAGCTGCTCGGAGGCCTTGTGGAAGAGAGTGTGGACGACCATTAGCTTGTGGAAACCACAAGTGCACTTTACTTTGTCATCTCTACAGGCTTGACCCTGAGTATCCCAATGTGCCTTCCAATTGTAAACAATGTGAAAAAGAATGTTTAGTTGCTCGTCCTGCAAAATGTACCCATAAATGTTCTATTGGAGCCTGCCATCCAGGTCCTTGCCCCCAATGTGAGATACTAGAACGATTAGCTTGCCACTGTGGCATAACAGAGATTTACTTGCGTTGCCGGGAAATATCTAAAGCCACTGAAGAGATGTTGTCATGCAAGCAACAATGTCCTAAGAACTTGGAATGTGGCCACCGCTGCCGTAACACATGTCATTCAGGAGATTGTGGTAACCAAGTATGCACCAAGAAAACCAAAGTGCACTGTCCATGTGGTAACATAAAGAAGGATGCTCCTTGCAACATGGTTAGAAATGGGGACACGAAAATATTATGTGATGAGACCTGCCAAGCAAAAAAGATAGCTGCAAAGTTAGAGAGTGACAAAGAAAAACAGAGACTGAAAGAGTTGGAGGAAGAGAAGAACCGCAAGGAGTTGGCTGAGTATGAGTGGAAATTGAGCGGTAAAAAGAAGAAATATAAGGAGAAGAAAATGGTTGTTAGTAAGGATGACAGAGGTTTGTTGCAGAAGTACTGGGTACCAATATCATCATTCCTAGTTATGATCTTAGCTGCTTGTTATTATATATTTTATGTGTGA
Protein Sequence
MARRYRDAAAKLQLNVQKHLNEMKELSSSEDEDPCESSVLDGVFQSYWRGGGDTHMLNRTKNLLEEAISGRAVTCLICIGSIKKIHPIWTCDHCYSYFHLSCIQKWANDSISLRCEETQGPITVFKHQKIEWCCPKCRQSYSKEEIPRKYRCFCGKTDDPPHHPWLLPHTCGEVCGKRLSAGDSCKHKCLLLCHPGPCPPCPQTVNGICFCEKEHKRVRCSAAKWSCGQICKKQLLCKSHKCENVCHEGDCPQCSYTSVQPCQCGSEKAKRPCSDPFWQCEKPCNKLFSCGYHKCDKTCHAGNCGPCPNSGMTTCPCGANQRFVQCPDVMETCLGTCGRKHEDCEHNCPEKCHKGPCPPCQVLVQKKCHCSTHTRSLPCSKDFKCETKCRGIRPCSKHGCARKCCNGNCPPCEKICDKPLQCGRHKCTNICHRGPCYPCPRESKVTCRCKETYVTVPCGRERQTKPPKCNLPCKIKYKCGHSEENKHSCHFGDCPPCKAICYKQYPKCSHQCKAVCHEYVAVLFKQVEKPATPWEVQPPKTKIMTLDCPPCDTPIPIVCFGEHETDNQACHSAARRPCGRECGRPLACGNHKCTLLCHLYRLDPEYPNVPSNCKQCEKECLVARPAKCTHKCSIGACHPGPCPQCEILERLACHCGITEIYLRCREISKATEEMLSCKQQCPKNLECGHRCRNTCHSGDCGNQVCTKKTKVHCPCGNIKKDAPCNMVRNGDTKILCDETCQAKKIAAKLESDKEKQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKMVVSKDDRGLLQKYWVPISSFLVMILAACYYIFYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00932106;
90% Identity
iTF_00050496;
80% Identity
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