Sver005464.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387309.1:2430773-2437142[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.56 43 5.1 0.5 1 23 96 119 96 119 0.89 2 9 0.037 2.8 8.9 0.1 2 23 145 167 144 167 0.96 3 9 0.0094 0.71 10.7 2.4 1 23 280 303 280 303 0.93 4 9 7.2 5.4e+02 1.7 0.0 2 23 330 352 329 352 0.85 5 9 1.1 87 4.2 1.3 2 23 375 396 374 396 0.95 6 9 0.00063 0.048 14.4 0.1 3 23 402 422 401 422 0.97 7 9 0.00038 0.029 15.1 0.8 1 23 427 450 427 450 0.98 8 9 0.031 2.3 9.1 0.6 2 21 458 477 458 480 0.88 9 9 0.00052 0.039 14.7 2.3 1 21 486 506 486 507 0.95
Sequence Information
- Coding Sequence
- ATGACCTTTCAACATCTGCGCTCAAGAACGAGAGGTAACCGAGATACTTCTCCGATTCTCTGCGAAGACGAAGAGAAGACAATAACTCTGGATAGAAAAATGAATTTTTCGTCTTTCGTGACAATCCGACCGGTGGGCAAGAAGACTTTACCTTGGGTTCGGGAGCAGCAGCAGAAGAGAGCCCAAGAGAGACGCCTGACAGAACTGGACTGGCAGTTCGATAATATAAAGACGGTTCTCAAGTGTTCAAACGCGTCTCCCGTCCGCTGCAGAGTCGGCACGAGGTTCGCCTGCAGCTACTGTCTCGATCAGTTCCAAAACCCAACAGAATTGAGGACTCATTCGGTTAAAGACCACGTCAACGACAGAGCCGAGTTCTTCAACGCGAGATCTTTGTCCAGACACATTGTGTACCtcgatattactggcttgaaatgcaaaatttgcaatctaataattgaaggtcttgaacaattaatggaccatttgaagacagttcatgacgaattgattcataagcagatcaagaatcagattgttccgttcaagtatgatggtaggaagatcatttgtggcgtttgcgcagctgatataggcgagtacaacgaccttcaagatcatatgtctgaacatttcaggaattatgtgtgtggattctGTATCGAGCCGGAATCCTTACTGATTGAAATCGAAGTTGACACATCATATATCCTATCAGTCGACGATGATGACCCTGAAGTGGCAAAACTAAGCGAAGTGGACAAACACAGAGAAAATATCAGGACCATCCTGCTTTCCAcaaacgccacgccaatcggcagatatggaagccttggctataactgttgttactgcaaagacgtatattcagatccgaaggaactcaagaagcacaccatcgaacggcatgatgaaggatacatctccactttcaagaataactacactatgcttaactatatcgtgaagttggacatcactggtcttcgttgcgaaatgtgcatgaaacctttcgacgaactgcagggcatcattgaccatttgacgatcgaacacgagaaattctttcacatagatatcccgagtcacatcgtaccgtttagatttgattctgacacgctacactgcgtagaatgctctttcgaatacaacaatttcaaaatcctcctagaacatatgaatacgcattacaggaataatatttgcgaagtttgtgaagctgggtttgttaaccgaagaatgttgcaggcccatatgtatcgccacaaaactggggttttccaatgcggattttgctctaaagtttttgacacacgcatcaaaatgaaagttcatgagaggatggtacatttatacgttaaaaagagaccaaaatgcaatgtgtgcgagaggaaattcaaggATTTTAATAAGATGATCCAGCATGAGGCTGATGTTCATGGCTTGCAGAGGAAGTTTAAATGTGATCTGTGCAGTCGAATGTTTACTACCCAAAGATCGTTTCAGATTCACAAGAAGTTTTATTGTGTTGCTGATGCTTGA
- Protein Sequence
- MTFQHLRSRTRGNRDTSPILCEDEEKTITLDRKMNFSSFVTIRPVGKKTLPWVREQQQKRAQERRLTELDWQFDNIKTVLKCSNASPVRCRVGTRFACSYCLDQFQNPTELRTHSVKDHVNDRAEFFNARSLSRHIVYLDITGLKCKICNLIIEGLEQLMDHLKTVHDELIHKQIKNQIVPFKYDGRKIICGVCAADIGEYNDLQDHMSEHFRNYVCGFCIEPESLLIEIEVDTSYILSVDDDDPEVAKLSEVDKHRENIRTILLSTNATPIGRYGSLGYNCCYCKDVYSDPKELKKHTIERHDEGYISTFKNNYTMLNYIVKLDITGLRCEMCMKPFDELQGIIDHLTIEHEKFFHIDIPSHIVPFRFDSDTLHCVECSFEYNNFKILLEHMNTHYRNNICEVCEAGFVNRRMLQAHMYRHKTGVFQCGFCSKVFDTRIKMKVHERMVHLYVKKRPKCNVCERKFKDFNKMIQHEADVHGLQRKFKCDLCSRMFTTQRSFQIHKKFYCVADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121920;
- 90% Identity
- -
- 80% Identity
- -