Basic Information

Insect: Shargacucullia verbasci
Gene Symbol: -
Assembly: GCA_947562105.1
Location: OX387310.1:3453075-3460828[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.99 75 4.4 1.4 1 23 200 222 200 222 0.92

2 16 0.3 23 6.0 0.5 3 13 258 268 257 272 0.84

3 16 0.67 51 4.9 0.1 2 23 313 335 312 335 0.95

4 16 0.046 3.5 8.5 0.2 3 20 374 391 374 393 0.95

5 16 6.6 5e+02 1.8 0.6 1 9 398 406 398 420 0.84

6 16 2 1.5e+02 3.4 2.1 1 20 634 652 634 654 0.78

7 16 0.15 11 7.0 1.1 3 23 668 688 667 688 0.94

8 16 0.12 8.9 7.3 0.6 2 23 694 715 693 715 0.95

9 16 0.23 18 6.3 0.3 1 23 737 758 737 758 0.94

10 16 1.7 1.3e+02 3.6 4.8 3 23 801 821 800 821 0.95

11 16 0.0012 0.091 13.5 0.2 3 23 838 858 837 858 0.98

12 16 4.7e-07 3.6e-05 24.2 1.8 1 23 864 886 864 886 0.99

13 16 2.9e-05 0.0022 18.6 0.5 2 23 892 913 891 913 0.96

14 16 0.46 35 5.4 2.7 6 23 924 942 924 942 0.98

15 16 0.17 13 6.8 0.2 1 20 948 967 948 968 0.94

16 16 0.0017 0.13 13.1 0.3 3 23 980 1001 979 1001 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.99	75	4.4	1.4	1	23	200	222	200	222	0.92
2	16	0.3	23	6.0	0.5	3	13	258	268	257	272	0.84
3	16	0.67	51	4.9	0.1	2	23	313	335	312	335	0.95
4	16	0.046	3.5	8.5	0.2	3	20	374	391	374	393	0.95
5	16	6.6	5e+02	1.8	0.6	1	9	398	406	398	420	0.84
6	16	2	1.5e+02	3.4	2.1	1	20	634	652	634	654	0.78
7	16	0.15	11	7.0	1.1	3	23	668	688	667	688	0.94
8	16	0.12	8.9	7.3	0.6	2	23	694	715	693	715	0.95
9	16	0.23	18	6.3	0.3	1	23	737	758	737	758	0.94
10	16	1.7	1.3e+02	3.6	4.8	3	23	801	821	800	821	0.95
11	16	0.0012	0.091	13.5	0.2	3	23	838	858	837	858	0.98
12	16	4.7e-07	3.6e-05	24.2	1.8	1	23	864	886	864	886	0.99
13	16	2.9e-05	0.0022	18.6	0.5	2	23	892	913	891	913	0.96
14	16	0.46	35	5.4	2.7	6	23	924	942	924	942	0.98
15	16	0.17	13	6.8	0.2	1	20	948	967	948	968	0.94
16	16	0.0017	0.13	13.1	0.3	3	23	980	1001	979	1001	0.96

Sequence Information

Coding Sequence: ATGTCGGATACATCGAGGAAAAGGTCCAGAAAGTCGAAGTTGGTGCCTCGAGAGTGCACTCCGGAAGATGATGTTAATTTGCAGGCTGCAGCAAAATCTTCGAGAACTGCAAAAATTTCAAAAAAAACAAACGATACACTATCATTGACTCCAAAAATCACAGAAATATATGAAAAATTGATTAAGAACAAGTTACAAGATGCACCGAAGAAGGAAGAACAACCAGAAGTGCATGTAGCACCTATACAGTTCCATATCAAAGTGGAGGTGGAAAAATGTGACGAATATTCTATACAAGTGATATCCGCTGATGATAACCCGTCTAAGGAAAACGAAAAAAGCAACCAAGACTCTTTAAATCTAGATTTACTGACATATACTCTGACCAATTACAAAGTAATTAACGCATCAAAGAAAATAATTAAAAATTCAACAAATGCAGCAGACAAGATTTTGGATATCGCTGTAAGAAATACTATAGGACATCAAATAGTTGGGTTTTTGAATAATAATTTACATGAAATAGAACTACAAGAGGCTTTAGAAGAATGGAGGTCTTGGCAATTCAGGAGTTTTCATAGAGAAGCTCCCTTATTTTACAAATGTTATCTCTGCGACAAATCTTGGTGGCACCTCTCAGATTTTCGTGAACATATAACTGAGCATCCCGAGTTGAATATATCTCTGGAAAAATATGAGAAACACGAATCAAACATCATAGCTTACCATCTGATCAAGCCTCCAGTTAGAGATATTCATACTGAAGGCCTTTGTGAAAGATGTGGAAAAAGCTTCAACCACCACAAACTTAACAGCAGAATCCAGAAGAAATACTATGGTATCGAAGGATGTACGAAGCAATTCTTCACCTGCACAAGTGCAGTTAATCACTCTGCAACCTGCATCCAATGCAAACAGAGATCTGCACCCACCAACCAATGTGGAATATGTCGATTATTTTTTGACATCGAAGAGCAACTCGACCAACATCTTCAGCTGTCTCATTCAGTTCGATCCGACGTTGTTATAATGTCTCGCTACAGGAACTGTAAAGATTGTTTGGGTAGATTCATTAGTTTTAATCTCCATGTCTGTGGCCGACGTGGTCCTCATCAAGGATGTCCATATTGCTTCAGAAACTTTCCCAATAAGCATGCAGTGGAATTACACATTGAATACTCAGAAGGATCATACGAGTGTGAAGTTTGCCAAAAAGTTCTGGCCTGGGATTGCGAGAAGTATGAACATATGTTGTCTCATACTGACAATTATATGGTAGCGATGAAATGTGTGAAGTGCGAAGACTTTAATGCGTTTATTAGTTATGATGGAGCCTTCGACCATAGGGTCAAAATGCATAAAGATGACAAAGATACGAAACACCAAAATTATTTTGATAAAATTATTGTCCCAAAATCCTGCATGCATCCAGGACCTGAGACACCGGAGGACGAATCGTCTGACTGTGAGTCTGAATGTCAGAAAGACTCGGTGCCTCCGTTCAAATTTGAAACCGTACCCGAGTTTCATAACGAAGAAGAAAATATTAAAATCAAAGATGAACCTGAAGACTTTATTATTAAAGAAGAACCAAATGATGACTACGAACACCAACCCTACGAATGCACACCTGACGTCACAGAATATAACCCCCCAGACATACACGTCAAACAAGAATACGAGGAGTTTGAATTTGAAGAATACGAAGACGACATTATAAAACAAGATACTGATGTTAACAAACATTTGATGGTCAAACAAGAACCTATAGAGGAATCAGAACTTGGCCAAGAATCTCTAGACACCGCTGACAATACACAAGAATCCAACGACTCCAACCGAGAACCGGAAACAAGAGATTCATCGGACTCTGAACCAGAAAATGGCAAAGCCAGAATGTATACATGCAAAAAATGTGGTTTTAAAGGCAAACATAAGCAATATAGGAATCACATTGAGATGGATTGCAAGAAATCCGTTCTCAAATTGAAGAATTTGCTCTGTACCAAGTGTAATTGGGAGTTCTCGTCGATGAAGAAGTATTTGGCTCACTTTGTGAAACATGGATACAAGTGTTTATCGTGTCCAGAGTGTTTAAAACAGTTTTATACGTTCACAAAATTGACTCCGCACGTCCAATCTCATATCAAACAAGCATTTATACGAGTGAAGTTGATCACTGTTACAGgtACAAAGAAAAAGCCAGAGTATCAGTGTAAAAAATGCACTGAAGTAGTGGATGCAGATCAGTTCTTCGAGCATTGGGAGCTGCACATCAATGATAGCCCGGACAAAAATGTAAAACCTGTACCAACTCGGTTACATAAGACAGGTGAAGAACAAGTCATGCAAGATGTTATAAATGAATCTATTAGACGCATCCAGAAACAGCCAAAAGACTGCAACCAGTGTCAACGGCATTTCAACCGCATCAACGAATGCAAACGCCACATAATTGAGCATCTTCTCCAAGACGCCTACAACCATAAGCTCGATTTCCAAGTGCTACTCTGTCAGATCTGCAGCGCTGGTTTCGTGACTCCTGAGAAGTATAAGCAGCATATGCGAGAGCATGCTTCTTTACCAGTGTACAAGTGTGAATTGTGTGATCGAGCGTTCAGTGACTCTAGTAATTTTACCAAACATAAAAAAGTACACAATTTAAAAGTGTTGATATGTGATTTGTGCGGAAAAAAATTTCAAACGAAGTTGTCTTTGATCAAGCATATGGAGATGCACAAAAATTCAGAGCCGGTGACCTGCATTCCATGCAACAAAATATTTCACTTTGAATCAACATACCGCAGACATGTACGTTCATTTCATGAGAAACTTGTCGGATACCGCTGTGTTATATGCAACACACGGTTTGGCTCACTCAAACTCAAATGGAACCATATGTGGGAAGTACACAAAGAGAGGAAGGACCAAGCGGATTGTCCAATATGTTTTCAATCCTTTAGAAAGTATTCCGATGTCCGTGCCCATGCCAAAAGTGAACATAAAACTGATGTGTCTGTGTACAGTGTTAAGAATCTTGGAGGCAGCTGCCCCTTGGTGGAAGGTATAGATGCTTCTGCAATGAAAAATTTTGAACGGTTTCTGCAGAATAACCAAGGATTTCGTATAGGACAGAGGGAGACGTTGATTGTTTATGAATAA
Protein Sequence: MSDTSRKRSRKSKLVPRECTPEDDVNLQAAAKSSRTAKISKKTNDTLSLTPKITEIYEKLIKNKLQDAPKKEEQPEVHVAPIQFHIKVEVEKCDEYSIQVISADDNPSKENEKSNQDSLNLDLLTYTLTNYKVINASKKIIKNSTNAADKILDIAVRNTIGHQIVGFLNNNLHEIELQEALEEWRSWQFRSFHREAPLFYKCYLCDKSWWHLSDFREHITEHPELNISLEKYEKHESNIIAYHLIKPPVRDIHTEGLCERCGKSFNHHKLNSRIQKKYYGIEGCTKQFFTCTSAVNHSATCIQCKQRSAPTNQCGICRLFFDIEEQLDQHLQLSHSVRSDVVIMSRYRNCKDCLGRFISFNLHVCGRRGPHQGCPYCFRNFPNKHAVELHIEYSEGSYECEVCQKVLAWDCEKYEHMLSHTDNYMVAMKCVKCEDFNAFISYDGAFDHRVKMHKDDKDTKHQNYFDKIIVPKSCMHPGPETPEDESSDCESECQKDSVPPFKFETVPEFHNEEENIKIKDEPEDFIIKEEPNDDYEHQPYECTPDVTEYNPPDIHVKQEYEEFEFEEYEDDIIKQDTDVNKHLMVKQEPIEESELGQESLDTADNTQESNDSNREPETRDSSDSEPENGKARMYTCKKCGFKGKHKQYRNHIEMDCKKSVLKLKNLLCTKCNWEFSSMKKYLAHFVKHGYKCLSCPECLKQFYTFTKLTPHVQSHIKQAFIRVKLITVTGTKKKPEYQCKKCTEVVDADQFFEHWELHINDSPDKNVKPVPTRLHKTGEEQVMQDVINESIRRIQKQPKDCNQCQRHFNRINECKRHIIEHLLQDAYNHKLDFQVLLCQICSAGFVTPEKYKQHMREHASLPVYKCELCDRAFSDSSNFTKHKKVHNLKVLICDLCGKKFQTKLSLIKHMEMHKNSEPVTCIPCNKIFHFESTYRRHVRSFHEKLVGYRCVICNTRFGSLKLKWNHMWEVHKERKDQADCPICFQSFRKYSDVRAHAKSEHKTDVSVYSVKNLGGSCPLVEGIDASAMKNFERFLQNNQGFRIGQRETLIVYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -