Sver012469.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387310.1:2568481-2582711[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.7 2.8e+02 2.6 0.3 1 23 229 252 229 252 0.89 2 10 1 78 4.3 1.4 1 23 284 307 284 307 0.96 3 10 0.0038 0.29 12.0 3.8 1 23 349 371 349 372 0.94 4 10 5.1e-06 0.00038 21.0 1.7 1 23 376 398 376 398 0.97 5 10 2.8 2.1e+02 2.9 0.6 2 23 406 426 406 426 0.88 6 10 0.0062 0.47 11.3 2.8 1 21 432 452 432 457 0.94 7 10 2.8e-05 0.0021 18.7 0.5 1 23 465 488 465 488 0.96 8 10 0.00025 0.019 15.7 2.0 1 23 494 517 494 517 0.97 9 10 3e-05 0.0023 18.6 0.3 3 23 529 549 528 549 0.96 10 10 3.6e-05 0.0028 18.3 2.0 2 23 556 578 555 578 0.96
Sequence Information
- Coding Sequence
- ATGGATGACTGTCCTGAACTTGTTGTTAAAAAATTGTGTTGTACGTGCTTAAGTAAAGATAGAAAACTATTTCAGTTATGTCGATTGCCTGACGGTGTGAACAACTTATATTTGTTACTGTCCTACGATTCTGAAGCTTACAGGGAGGGTTTCTATAAAGACACGGCTAGTTTATTTATATGTTGGGAGTGCAGAGCCACTATGAGCAGGATCACTTGGTTCCGTCAGCAGGCATGTACTGCACAAAGACAGCTGACTTCAATAGCCGATGGGAGAATAGATATTCAAACCACATGCCTATCACGTCTCTCTTCACACTACAGCACATCGTACCTGAAAATAATCTCTAAATCAGACAACATATTAACTGACAACTTCATTGATTGTGGTCCAACCACCAACATAAAGAGTGAAAGCGAAGAAGACATACCACTATCAGAACTACATACAAATTGGACTTCGGAGAATGAAACAGGAGATATGACCATAGACTATAAAGTGGAGAGAGAATTCGAACAAGAAGGTCTGTTATACAAATTAAAAAAAGAAAAGTTTAAAAAGAAGAGAAAGAAATTGAAGAATATCAGAAATAAGAATTATTTTTCTACTATTATTGTTGGAGATGGGGAGTTGGAGGATGTAAGGATTAATAAAAAGATGGCGTCGAGTTTTGTTGATGCGGAATTCAAATGTGATAGCTGTATCGAAGGGTTTAAGAGTCAAGTTGAAATGGATGAACATAATTTAAGTTTTCATGTTGAGaaacccaACCATATTCAGTGCGACATATGTCTGGTGTACATAAAACTATCTACCTACCAAGACCACAGGGAAGCCCATTATCATAAGCACATGTGTGAATTCTGCGCACACACCAGTTATAGTCTGACAGACATGTTGGTACACCTGAGAAGTGGACACGCAATGAAAAATGTTGTGCCTGTTAAGAGGAAAGAGGGTCACGGGAAGGTCGCAGAAGTGCCAAAGCCAGGTTCCAAAGCCCGCAAGAACTCTGCCATGATGGATAAAAGAACGCCTTTCGGATATTTGTGTTCGGAATGCAACAAATATTTTGACAACAAGAACCAAAGGTGGAAGCACGTGCAACGACACCACAGGGAAGGTTACAAATGTGTTACATGTGGCAAGAGGTTCGCCTTCAAGAATAATCTCACGAGGCATGAGCAACTCCACCAAGGCCCACCACCTCGTGAAGAATGTTCAGTCTGCCACAAAATGATCAGAGTTGATCTTGTGAAGATCCACTCGAGGATACACTCGGACAGGCAAAGGTTCAGCTGCGTGGAGTGCGCCAAGTGCTTCGTGAGTCGTGCGTCGTATGAGCATCACTTGAAGTACACCCAGGCGCACGCGCAGACTGATATATTGAAATACAAATGTGGTATGTGCGACAAGGGGTACAGGTCTCGTGGTGAGTTGCGGGACCACGTGAACTACCAACATATGGGCAAGACCCAGCACAAGTGTCCTGTTTGTGGAAAGGCGCTTGCAACTCGGCGCTGCATCACCCGACATGTTCGTCGGGCACACGACGGCGTTAAAGAAAGCGCGCGCGATAAAATATGTCAGCAGTGTGGCAAGGCCTTTAGGGACAAGAAAGGTCTCCGCGAGCACGAACTAATCCACACGGGCGAAAGGCCACTCTCGTGCGAAATATGTGGATGTACCTTCAGACAGAGCGCCTCTCTATACACGCACAGGAAACGAGTGCACAAAATATACCCAAATACTAAGCGGGTAACACTATTGGAACAAAATTGA
- Protein Sequence
- MDDCPELVVKKLCCTCLSKDRKLFQLCRLPDGVNNLYLLLSYDSEAYREGFYKDTASLFICWECRATMSRITWFRQQACTAQRQLTSIADGRIDIQTTCLSRLSSHYSTSYLKIISKSDNILTDNFIDCGPTTNIKSESEEDIPLSELHTNWTSENETGDMTIDYKVEREFEQEGLLYKLKKEKFKKKRKKLKNIRNKNYFSTIIVGDGELEDVRINKKMASSFVDAEFKCDSCIEGFKSQVEMDEHNLSFHVEKPNHIQCDICLVYIKLSTYQDHREAHYHKHMCEFCAHTSYSLTDMLVHLRSGHAMKNVVPVKRKEGHGKVAEVPKPGSKARKNSAMMDKRTPFGYLCSECNKYFDNKNQRWKHVQRHHREGYKCVTCGKRFAFKNNLTRHEQLHQGPPPREECSVCHKMIRVDLVKIHSRIHSDRQRFSCVECAKCFVSRASYEHHLKYTQAHAQTDILKYKCGMCDKGYRSRGELRDHVNYQHMGKTQHKCPVCGKALATRRCITRHVRRAHDGVKESARDKICQQCGKAFRDKKGLREHELIHTGERPLSCEICGCTFRQSASLYTHRKRVHKIYPNTKRVTLLEQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050433;
- 90% Identity
- -
- 80% Identity
- -