Basic Information

Insect: Shargacucullia verbasci
Gene Symbol: salm
Assembly: GCA_947562105.1
Location: OX387282.1:7060390-7081690[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.26 20 6.2 1.9 1 21 49 69 49 70 0.94

2 8 3.7e-06 0.00028 21.5 0.9 1 23 369 391 369 391 0.98

3 8 7.3e-06 0.00055 20.5 2.1 1 23 397 419 397 419 0.98

4 8 0.0054 0.41 11.5 2.2 2 23 675 696 674 696 0.97

5 8 0.022 1.7 9.6 1.6 1 14 702 715 702 716 0.94

6 8 0.58 44 5.1 0.0 10 23 743 756 741 756 0.93

7 8 3.3e-06 0.00025 21.6 1.7 3 23 837 857 835 857 0.96

8 8 3.9e-07 3e-05 24.5 0.5 1 23 863 885 863 885 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.26	20	6.2	1.9	1	21	49	69	49	70	0.94
2	8	3.7e-06	0.00028	21.5	0.9	1	23	369	391	369	391	0.98
3	8	7.3e-06	0.00055	20.5	2.1	1	23	397	419	397	419	0.98
4	8	0.0054	0.41	11.5	2.2	2	23	675	696	674	696	0.97
5	8	0.022	1.7	9.6	1.6	1	14	702	715	702	716	0.94
6	8	0.58	44	5.1	0.0	10	23	743	756	741	756	0.93
7	8	3.3e-06	0.00025	21.6	1.7	3	23	837	857	835	857	0.96
8	8	3.9e-07	3e-05	24.5	0.5	1	23	863	885	863	885	0.98

Sequence Information

Coding Sequence: ATGATTCAGTTAGCGACGATAAAATTTGGCATACATGAGAAAGTGAGCACTAAAATTCGTCACCAGCGGGGTGAAAGTTCGGGATCGTGTTCCGAAGATGACATTAACAATGCGTGCGATGAAACTAGAGACCGGCCTGAAGCGCACATGTGTCCGCGCTGTCAGGAGCAGTTCGAGAACCTTCACGAGTTCCTGTACCACAAGCGACTGTGCGATGAAAAAGCGTTGCAAATGGGCGAGGAAAGAATGCACTCGGATCCAGAGGAAATGGTCGTTTCAGGCGACGAAGAAATGGATGGACCTAACAAACGATTAGAACAAGTCCGACGGCATCGACAAGATGCGGAAAATAATAACAGCCTCGAAGACGGTGAAGCAGAAGTGCCTGAAGCCGACGTGCCGCCGGTCGGCCTTCCCTTCCCGGTGGCCGGCCACGTCACGCTCGAAGCTTTACAAAATACTAAAGTTGCCGTAGCGCAATTCGCCGCGACTACAATGGCAAACAATGCTGATAATGAAGCGGCGTTACATGAACTAGCCGTGCTACAGAGCACGCTATTTACGCTACAACACCAACAAGTGTTTCAGCTACAATTAATACGCCAATTACAAAACCAGTTATCATTAACGCGACGGAAAGACGACCAGCCCTTGAGCCCGCCGCCGAGTGAACCAGAGCCAGTACCTGCGCCTCCCGCTCGATCGCCGTCGCCGCCTCGTCCGCCACGGGAGCCCACTCCTGTCGCACCCACTCCTCCCACTAGTCAAAGCTTGCCGTCAACCCATTCGCATCTCATACCTAAGACGGAACCTATCTCCGTTCCTAAACTCCCAACCTCATCTCCACCGATGATGTCCCATCCACCTTACAGCTCCATTTCCTCATCGTTAGCGTCTTCAATAATCACAAACAACGACCCACCACCATCTCTAAACGAACCCAATACGCTTGAAATGCTACAAAGGAGAGCACAAGAAGTGCTAGACAATGCGTCACAAGGCTTACTAGCTAATAATCTTGCCGATGAACTCGCTTTCCGTAAATCGGGGAAAATGTCACCTTACGATGGAAAATCTGGAGGAAGAAACGAACCATTTTTCAAGCATCGCTGCCGTTACTGTGGAAAAGTGTTTGGAAGTGATTCGGCGCTGCAAATCCACATTCGATCACACACAGGTGAAAGACCTTTTAAATGTAATGTATGTGGATCACGATTTACAACCAAAGGAAATCTCAAAGTACATTTCCAAAGACACACATCAAAGTTTCCGCATGTCAAGATGAATCCCAACCCAGTACCAGAGCATTTGGATAAATACCACCCCCCGCTGTTAGCGCAATTGTCGCCGGGACCAATTCCTGGAATGCCACCACATCCACTACAATTCCCTCCGGGTGCACCAGCTCCTTTTCCGCCAAGCTTGCCGTTGTACAGACCCCCACACCATGACTTACTGCCACCTCGTCCACTCGGAGATAAACCTCTACCGCCTCATCCACTGTTTACAATGCGAGAGGAACAAGATGCTCCGGCTGATCTCAGTAAACCATCCGCGCCGAGCCCTTCTCGATCAGCACCCGAAGTTAAGTCTGAACCACAAGACGAAGAATGTCAACGAGATTCCAGCTTCGAAGACACTGATCGTGTGTCTCCTAAGCGAGAACCTGATGAAAACGATACCACGCAGGATCCAGAACAAGACAGATATCCTTCAACCTCGCCCTACGACGACTGCAGCATGGACTCAAAATATAGCAATGAAGAACAAATAGGCAGAGAGAGTCCCCATGTGAAGCCCGATCCAGATCAACCGGAAAATCTCTCAAGTTCGGAGAGCGGGCGCAGCGCACGGGCATCGCCACCGTCGCCCACCATGTCGACGCTGTCGACGCCGCCGAGGCTGCCGCTGCACTCGCCGCTGCCGTCGCCGCCCACACCTATCGCGGCGCTCGGCGCGCTCGGAGGATCGCCCTTCAGCCCGCTCGGACTCGCGTTCCCTCCCGCAGTGCGCGGCAACACGACCTGTAACCTCTGCTACAAGACGTTCGCCTGCAACTCTGCTCTGGAGATACATTACCGGAGCCACACCAAGGAGCGACCGTTTAAGTGCACCGTCTGCGATCGTGGATTCTCTACAAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCGCGCGCGCACCCCGCCCCCCGCACGCCACTGCTTTGGACCTGTGGAACGCCTTCGTTTACCCGGGCAACATGAAGCAACACATGCTAACGCACAAAATCCGCGACGTCCCTCCCGGGTTCGACAAGAGTTCGAGTGGAGCTGATGATGGCCGAGAACCGAGCCCTGATCGTCGCTCGTCGCCCGATAAGCTCGATCTCAAGCGATCACCGCCTGCGCACCCGCCACCGCAAATGACGCACCCCCCACCTATTGATATGCCACCACTGCCTAAACGTCCCAGTGTACCGAGCGGGCCGACGCACCCACCGCCGCCGGCGTCTTCCAAACACTTGTGTGGGGTGTGCCGCAAGAACTTCTCCTCATCGTCTGCGCTTCAGATCCATATGCGCACACACACTGGGGACAAGCCCTTCCGATGCGCTGTATGCCAGAAGGCCTTCACTACTAAGGGTAACCTCAAGGTGCACATGGGTACACACATGTGGAGCGGCGGCGCATCCCGGCGTGGACGGCGTATGTCGCTGGAGTTGCCCCCGCGGCCACTACATGAGCCACACGACCTACTACGCCGCCCCGATCTCTTCTACCCCTACCTACCCGCGCCCTTCCTCAACGGCATGCAGCAGAAGCTGAATGAGATATCAGTAATCCAGCAGAGCGCGGGTCAGAATGGTGTAGCAGGGAAATTTCCTGGACTACTCGGGTTTGGAGCCTTTGGAGGCGCGAGGCCAGGAGCTGCGTCACCGCTGGAGCGACCACCTTCACTAGAGGGCGGCGATGAGAGGCAGGCCGCTATGCGCGAGTTGGCCGAACGTGGACGCGAATTGGCTGAGCGCAGCCGGCAGATGCGCGAAGAGAATGAATACCGGTCCCCACCGGCCCACAGCGCGCACGCTCCCCCAGCGGCGCAGGCGTCGCCACCGGCGCCTCACCACCCACACCCGCTGGCGTCGCTGCCGCCGCCCGCGCGCACCGAGGGTCTCACGGTTTAA
Protein Sequence: MIQLATIKFGIHEKVSTKIRHQRGESSGSCSEDDINNACDETRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQPLSPPPSEPEPVPAPPARSPSPPRPPREPTPVAPTPPTSQSLPSTHSHLIPKTEPISVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFTMREEQDAPADLSKPSAPSPSRSAPEVKSEPQDEECQRDSSFEDTDRVSPKREPDENDTTQDPEQDRYPSTSPYDDCSMDSKYSNEEQIGRESPHVKPDPDQPENLSSSESGRSARASPPSPTMSTLSTPPRLPLHSPLPSPPTPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDVPPGFDKSSSGADDGREPSPDRRSSPDKLDLKRSPPAHPPPQMTHPPPIDMPPLPKRPSVPSGPTHPPPPASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGARPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMREENEYRSPPAHSAHAPPAAQASPPAPHHPHPLASLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00622287;
90% Identity: iTF_00042954;
80% Identity: -