Basic Information

Insect: Shargacucullia verbasci
Gene Symbol: -
Assembly: GCA_947562105.1
Location: OX387305.1:1293300-1301178[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.14 11 7.0 0.5 1 23 195 217 195 217 0.97

2 12 0.031 2.4 9.1 4.2 1 23 224 246 224 246 0.97

3 12 0.25 19 6.2 1.3 1 23 250 273 250 273 0.86

4 12 3.3e-06 0.00025 21.6 2.0 1 23 278 301 278 301 0.94

5 12 0.0014 0.1 13.4 1.4 2 23 308 329 307 329 0.97

6 12 3e-06 0.00023 21.7 1.0 2 23 343 364 342 364 0.97

7 12 0.019 1.5 9.7 1.3 3 23 371 392 369 392 0.93

8 12 0.0036 0.27 12.0 2.2 2 23 403 425 403 425 0.96

9 12 0.19 14 6.6 1.2 1 23 432 455 432 455 0.92

10 12 0.0019 0.14 12.9 0.1 6 23 468 486 467 486 0.94

11 12 0.00022 0.017 15.9 5.0 1 23 495 517 495 517 0.98

12 12 0.0009 0.068 13.9 0.2 1 23 522 545 522 545 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.14	11	7.0	0.5	1	23	195	217	195	217	0.97
2	12	0.031	2.4	9.1	4.2	1	23	224	246	224	246	0.97
3	12	0.25	19	6.2	1.3	1	23	250	273	250	273	0.86
4	12	3.3e-06	0.00025	21.6	2.0	1	23	278	301	278	301	0.94
5	12	0.0014	0.1	13.4	1.4	2	23	308	329	307	329	0.97
6	12	3e-06	0.00023	21.7	1.0	2	23	343	364	342	364	0.97
7	12	0.019	1.5	9.7	1.3	3	23	371	392	369	392	0.93
8	12	0.0036	0.27	12.0	2.2	2	23	403	425	403	425	0.96
9	12	0.19	14	6.6	1.2	1	23	432	455	432	455	0.92
10	12	0.0019	0.14	12.9	0.1	6	23	468	486	467	486	0.94
11	12	0.00022	0.017	15.9	5.0	1	23	495	517	495	517	0.98
12	12	0.0009	0.068	13.9	0.2	1	23	522	545	522	545	0.97

Sequence Information

Coding Sequence: ATGGAAAACTCAGTGGTCGTAGAAATATCTGTGAAATCTGAACCAATAGACTCAAGTTCATCAGATAATCATCAAAATGGTTGTAATGAGGAAAGTGTCGAAATCAAGGAAGAAGAAATTTGGATCAAGCCAGATCCTCAAGAAGATGAATCTCAAGATTCTGTGAAGAAAGATAATCAAGAAACAAGACCAGAACCCGCCGCCAGCAAAGTTGAAGAAGAATCTCAGAATGAAACATATAATTTATATAAAGAAAAAACAGAAGAATCAAAATCAGGATCACTCAAGAAGATAATAGAAAACGATCTAAAAGCAACTTCAAGCCAAAATGAAAAGGTTGTCAATGGAGATAATGAGCCGCAAGCAGAGAATAATCAACCAAAAAGTAAGTTGCATCCAAACACGAAACTGGCAGCTTGCTATCGCAAGTCCATGATCCTAACACAAGTGTCTTTCCTCCCAGTGGAAACCCCCCTTATGTACTCCTACGAGATAACCAAGAACATAGAAATCGTCACCATCAGCGAAGAAGAGCGCCAGAAGGAGTACCAGGAGACGCTGAAGTCGCGGCAACATATGCGCCATGTCTGTGAGCACTGTGCGGTAGGCTTCGTGCTGGAACAGGCCTATTTGATGCATATGAAGGTGCATGATCCTGAATCAGGCGAGCACGAGTGCTTACTCTGCCACACCCGTCTGAAGACGGCCGACATGTTATACCGGCATCGCTTACGTCACTTCCGCCGGTACCGGTGCCTCCTTTGCTGGACCCGGTTCAAGGATAAAGACACAGCAGCCTGCCACGTCATGACGGATCATGCAGGACAGGCCTTCGAATGTGAACACTGTGGGAGGGGATTCAAACGCCCACAATACCTGAAGCGCCACGTGGAGCAGTACCACACCAAGCCGCTGCAGCTGGAGTGTCAGGTCTGCTTCCGAGTGTTTCATGAGAGAGGCTGGTATAGATCACACATCAGAACTCACAATGAGGAGGTGCGAGCTAAAACAGTGAAGTTGCCAGTCTCTTGCCAGATCTGTTCTCGCGAGTTCAAGAACAAAGCAAGTCTGAAGCGCCATCTTCTGACTCACGACTCCGAGAATGTCCACTGCGAGATTTGTTTCGAAAAGTTCAAGAACAGAAACATGTTGGGACAACACTATTTACAGGTTCATAACGAAAAGTATGAAGGGGCTCCAGAGGAGACGTGTACAGAATGTATGCGGGTTTGTGCCACACGTGCGATGCTCAAACGACACATGCTGAGGATGCACAGCGATAGGACTAAAAAATACCAGTGCGACCACTGCCAGCGCCTGTACCTAACCAAGGGCGAGGTGCGGTCGCACATCACGTGGTCGCACATGCCGGCCGAGGCGCGCGGCGGCCACGCGTGCGCGTGCGGCCGCGTGTTCCGCACGCCCTCGCTGCTGCGCGACCACGCGGCCAGGTTCCACGCTCAACAGCCGCCGCCCAGGGTGCATCGGTGTGATCATTGTGAGAAGGCGTTCGCAAACAAGCAAGTCCTCAACCGCCACAAGAAAAGCCACTCCAACGAGATGTATCCGTGCAACGAATGTGGGGTTCTCTTCAAAACGCAGCCCTACGTCAAAGTACACTATCAAATAAAACACTTAAATATGACGCGAGCGCAAATAAAGGCACAGAGGAAACTCAACAAAAATAGGAATATTCAGAACAACATCCAAACGACCACCAATTGGGAGCCGTGTATTGCTGACGAGGGTCATAATGGGATGGTCGAGGACCCTCTTTTGGTAGAAAATGAGGTTCAAATAAAATTGGAACCGGATGATGATGTTGGAGCGCCGATGTTACAGACGTTAGTTGATATAGGGAGTAAATAG
Protein Sequence: MENSVVVEISVKSEPIDSSSSDNHQNGCNEESVEIKEEEIWIKPDPQEDESQDSVKKDNQETRPEPAASKVEEESQNETYNLYKEKTEESKSGSLKKIIENDLKATSSQNEKVVNGDNEPQAENNQPKSKLHPNTKLAACYRKSMILTQVSFLPVETPLMYSYEITKNIEIVTISEEERQKEYQETLKSRQHMRHVCEHCAVGFVLEQAYLMHMKVHDPESGEHECLLCHTRLKTADMLYRHRLRHFRRYRCLLCWTRFKDKDTAACHVMTDHAGQAFECEHCGRGFKRPQYLKRHVEQYHTKPLQLECQVCFRVFHERGWYRSHIRTHNEEVRAKTVKLPVSCQICSREFKNKASLKRHLLTHDSENVHCEICFEKFKNRNMLGQHYLQVHNEKYEGAPEETCTECMRVCATRAMLKRHMLRMHSDRTKKYQCDHCQRLYLTKGEVRSHITWSHMPAEARGGHACACGRVFRTPSLLRDHAARFHAQQPPPRVHRCDHCEKAFANKQVLNRHKKSHSNEMYPCNECGVLFKTQPYVKVHYQIKHLNMTRAQIKAQRKLNKNRNIQNNIQTTTNWEPCIADEGHNGMVEDPLLVENEVQIKLEPDDDVGAPMLQTLVDIGSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -