Sver006175.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387306.1:1090056-1092952[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.034 2.6 9.0 0.4 1 23 241 264 241 264 0.94 2 18 9.1e-06 0.00069 20.2 2.9 1 23 269 291 269 291 0.99 3 18 0.015 1.1 10.1 1.1 1 23 321 344 321 344 0.94 4 18 0.028 2.1 9.2 0.5 2 23 405 427 404 427 0.92 5 18 0.00038 0.028 15.1 1.0 1 23 433 456 433 456 0.93 6 18 0.0017 0.13 13.1 0.3 3 21 461 479 459 480 0.94 7 18 0.0034 0.25 12.1 0.1 1 23 488 511 488 511 0.94 8 18 1.9 1.4e+02 3.5 1.0 1 23 516 539 516 539 0.92 9 18 0.0044 0.34 11.8 0.2 2 23 552 573 551 573 0.95 10 18 0.0035 0.27 12.1 1.9 1 23 579 601 579 601 0.97 11 18 9.9 7.5e+02 1.2 0.2 2 9 607 614 606 617 0.88 12 18 0.0022 0.17 12.7 2.7 1 23 637 659 637 659 0.97 13 18 0.068 5.1 8.0 0.1 3 23 665 685 664 685 0.93 14 18 0.00078 0.059 14.1 1.5 2 23 704 726 703 726 0.96 15 18 0.00087 0.066 14.0 2.7 1 23 732 754 732 754 0.98 16 18 0.0024 0.18 12.6 5.0 3 23 762 782 760 782 0.95 17 18 2.4e-05 0.0019 18.9 2.1 1 23 788 811 788 811 0.97 18 18 0.8 60 4.7 3.6 3 23 818 839 816 839 0.94
Sequence Information
- Coding Sequence
- ATGGGGGAGGCAGAGTTGAATCAAGCGAACTCGGACAACTTAGACTGGATAAAACAAAAACTCCAGACAGTATGGACATCTCCCAAATTCTGTGGACTGTGCCTCGAGAACCAAGGCAACTTCAGTTCTGTGGACATGGAGTTTGTAATCAGCAAGCAGACTTTTTCAAAATGTTTGCAGGATATAGTGAATTATGTGTTTAATGATAATACTGAAAACCTGATGTCAAGCCCACACTTGTGCGACAGTTGCACAGAGAAGACAATTCAGTCTTATCTTTTCATTCACAATACAAAACAATTGTCCAAAATCCTTAACAACTGTGTCACGGATATTTATTCCAAAGTCATAGATGTCAATGAACAACTTGATGATTGTGTCAAATATGACAATGCTAACGTAATGATTGTCCTCGAAAATGACACAGCACTTTACAAAACTATTATTGACATGAAATCTATGACTGAAATAGTCCCAACTGCCACACCTATAGCAATGAAAGAACCAATTGTGCCTAAAATAAAAGAAGAGACGAAATCAATAATACCTTTAATGCAACCGAAGAAAGAAGAAGAAAAACCAAGGGAAGTGAGAGAAATCAAAGAAAGGAAGGTGGTAAAACTAGATGGAACACCAAATATTACATTGAAAGAAGGTCATTTGATTATAAAACCTTTAAGCTCTATCAGGAAACCGACCCAAGTGCCTCGGTACAACACTTATGAATGTGCAAATTGTCCAGATATATTCACAACTTACAGATCTTTGAAGGAACACGAAAAGGCTAAACATAAAAAGTCTGTATACAGCTGTAAATTGTGCGATAAAACATACAATACTCAGCAGTATTTGAATATACATTACAAGACACACTGTAAAGCTAGATGCAAGTTATGCCAAGTTATTCTCCCAGAAGGTGAACTAATGGATCATTTGAGAAATAACCATACCAACTTGGTATACCTTTGCAACTTCTGCGACTTCGTATACTACACCCAAGAATCGTTAGACACACATTTCAAGATAAGTCACTTAGTTAATGATACAAAAGCGAAATCTCAATGTATTATGTGTCTCAGGAACTTTATGGACAACAAATTAAAGAAGCATAAATGCAAGTTTTCTTGTTCCGAATGTTTTGTTATGCCTTGCATTCATTATAAGTATCTTATGTCTTATAGAGAGCAAGTCTTAAGCCACACAAATAAAGTTAAATGCATAGATTGTGATTACGTTACTCGGCGAAAGGAACATTTGATTGGACATGCCAACCGAGAGCATTTAGATCATCATCCATTTACTTGTGCGGATTGTGGACAACAGTTTTACACGAAATTGAGTTTGAAAACCCATATAGTACAATTTCATCAAGATCTTTTCTGCCCATACTGTGATTTTGGATTCAAAGATACTAACTCTTTAGAGAATCATAAAAGAGCTTGTAAATGTGTTATTCGAGCATATGCTTGTAATAGCTGCTCTGCATCATTCGATACGGCAGAAGAGTTGACGAATCATGAGAATTTGAGGCATAATGAAGAAGTTTATGCTTGCAACCTTTGCAAGGGCAAATTCCTGACTTATATACAGTTACAAGAGCATCATGCGAGAGTCCATGGAGGTATACAGTGCAAAAAAAGGAGAAAACACATAGAATGCTCTCTGTGCGACCTAATGTTCAAGAATATTAAGGAGTTGCTCCAACATGAGCAATTGCACGATGCAAATGATGTTTATCCTTGCAAAGTCTGCTCAAAACAGTTCAAATCATTGATGAAGTTATACATACATAATCAAAAACACTACACTAACCGAATAAAATGTTCAGGTTGCAATAAAAAAGTGGCTGCATCATTCTACCCACAGCATGCAGTGAGATGCCCATACAAGAGAGATGCTGCTTTGAGCCATGTTTGTGAAGTATGTGGCAAGTCTTTCCACCTAGAGTCTCTGCTCCGATTCCATCAGAGAGTTCATATGGAACCTGAACCATGTCCTCAGTGTGAAAAGATCATCAAGCCTACAAGTCTAAAAAGACATATGGAGCAAGTCCATGGTGATACTACTGATAAACCACAGAAAAGGAATACTCAAAACAAGTCATCTATTGAGTGCGAGCTATGTGGGCATGTTGTGAGAAAGAAATGTGATTTAGAGGCTCATATGAACCGTTACCATCTAAAAATCAAACCCTATGTCTGCCATATATGCAGTAAAGACTTTTGTGGTAAAATCCGTCTGAAAGAGCACATAGCTACCCATACAACAGACAACAGTTGCTTCTGTGCTGTCTGTGGCAAGAAATTTGCTAACCGTGTTTGCTTGAAAATGCACTTTAGAATGCATACTGGAGAAACACCATATTCCTGTGATATTTGTGGACAGAAATTTAGGTCTTCAAGCATGATGAAGACTCACCGATTGAAGAAACATTTGCAGAGGACCGTTTGCTGTCCGTTATGCGATTATATGTTCTTCATGGTCAGAGATATGAGGCATCACTTCAAGAAAGTTCATTGGAAGTACAAAGATGGAAGACCGTTCAATCCCAGAGACGTTGAAGAGTTATCTAAAGAACATTACCATCTTTTTGAAGATGGCCGACTGCCGAAAGTTACTTCTGATACATGA
- Protein Sequence
- MGEAELNQANSDNLDWIKQKLQTVWTSPKFCGLCLENQGNFSSVDMEFVISKQTFSKCLQDIVNYVFNDNTENLMSSPHLCDSCTEKTIQSYLFIHNTKQLSKILNNCVTDIYSKVIDVNEQLDDCVKYDNANVMIVLENDTALYKTIIDMKSMTEIVPTATPIAMKEPIVPKIKEETKSIIPLMQPKKEEEKPREVREIKERKVVKLDGTPNITLKEGHLIIKPLSSIRKPTQVPRYNTYECANCPDIFTTYRSLKEHEKAKHKKSVYSCKLCDKTYNTQQYLNIHYKTHCKARCKLCQVILPEGELMDHLRNNHTNLVYLCNFCDFVYYTQESLDTHFKISHLVNDTKAKSQCIMCLRNFMDNKLKKHKCKFSCSECFVMPCIHYKYLMSYREQVLSHTNKVKCIDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQDLFCPYCDFGFKDTNSLENHKRACKCVIRAYACNSCSASFDTAEELTNHENLRHNEEVYACNLCKGKFLTYIQLQEHHARVHGGIQCKKRRKHIECSLCDLMFKNIKELLQHEQLHDANDVYPCKVCSKQFKSLMKLYIHNQKHYTNRIKCSGCNKKVAASFYPQHAVRCPYKRDAALSHVCEVCGKSFHLESLLRFHQRVHMEPEPCPQCEKIIKPTSLKRHMEQVHGDTTDKPQKRNTQNKSSIECELCGHVVRKKCDLEAHMNRYHLKIKPYVCHICSKDFCGKIRLKEHIATHTTDNSCFCAVCGKKFANRVCLKMHFRMHTGETPYSCDICGQKFRSSSMMKTHRLKKHLQRTVCCPLCDYMFFMVRDMRHHFKKVHWKYKDGRPFNPRDVEELSKEHYHLFEDGRLPKVTSDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050237;
- 90% Identity
- iTF_00050237;
- 80% Identity
- -