Sver006201.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387306.1:2024123-2027410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0019 0.14 12.9 6.2 1 23 180 203 180 203 0.96 2 17 0.00052 0.04 14.7 2.1 1 23 212 235 212 235 0.96 3 17 0.015 1.1 10.1 0.7 2 23 248 270 248 270 0.97 4 17 0.00053 0.04 14.7 1.3 1 23 279 302 279 302 0.96 5 17 0.00038 0.029 15.1 3.8 1 23 314 337 314 338 0.96 6 17 0.00011 0.0082 16.8 0.7 2 23 366 388 365 388 0.97 7 17 0.0012 0.088 13.6 1.2 2 23 398 420 397 420 0.96 8 17 0.066 5 8.1 1.2 3 19 426 442 424 445 0.92 9 17 0.00014 0.01 16.5 0.5 2 21 450 469 449 472 0.95 10 17 0.32 24 5.9 2.2 3 23 482 503 481 503 0.93 11 17 0.00023 0.017 15.8 3.5 1 23 508 531 508 531 0.94 12 17 0.0001 0.0078 16.9 1.9 2 23 543 565 542 565 0.96 13 17 0.73 55 4.8 0.1 2 23 622 643 621 643 0.89 14 17 0.0069 0.52 11.1 1.4 2 23 649 670 648 670 0.97 15 17 7.4 5.6e+02 1.6 1.9 3 23 678 700 676 700 0.88 16 17 0.057 4.3 8.3 0.1 1 23 736 758 736 758 0.97 17 17 0.07 5.3 8.0 1.9 1 23 764 787 764 787 0.97
Sequence Information
- Coding Sequence
- ATGGCTCTTGGCCAGAGATCTGAATATAGTACCTTCGATACATTCATTTGTCTAATATATTGGTATCTGAACTGGTTATTAAAGATAGCAATAATGGCAGATATAGATGTTAAGGTTAAATTAGAAGAACATGGTGAAACAAGGAAAGATCCTACCTCATTTTTACCCGAGGAGCCGATGTCTTATGAAATTAAGAAAAAAAAGAAAAAAAAAAAAAGACAGCAAGAGGATCCGTTTAAAGATATTGATGATAAAATGGATATTAAAATTGAACCAATTACGCTGTTAGACCCTGAAGTAAAAATTAAGGTGGAAGATATTGAAGTTGAATTGGATTTTCATGATTTTGCGGATAATAGTGGCATGATGCAAGAGGGTCCCGATAAACAGGAAACTGTAGAGCCAGCAGTGAAAATAGAACAGCAAAATCATGAAGCTGTCTTACTAACCTTTGAGAGTGTCATCAATGAGAAATCAGTACTAGAACAAACTAAAATGTTTCCATACAACAATGCCATACCCAATATAGCTCCAACCCACATCTGCAAAGTGTGTCACCTAGTCTTTCAGTCCAAGAAAACGTTACGTATGCACCAGAGAAGAAAACACAAATCATTCAGAAAATCTTTCAAACACATTTGCGATCACTGTGGCATGTCATATGAAATGAAGAATAGCTTAGTTGCACATATAAAGAGGAAACACGGACCAAATTCCATGCCTGATGACCGAGAAGAGAGGACTTGTGAAATATGCGCACTAGTGTTCAAAGGAATGACTCGGCTACGAATGCACATGAGAAGAAAACACGGCTCCTTCCAAGAGTCCTTTAAACACATTTGCAAAGACTGCGGTTTAACTTATGATAAGTACAGAAGTTTGATAGTCCATATACAACGTAAACATTCTAATGATAAGAAACCTGAAATCAATCAATGGTACAATTGTTCATTCTGTCCAAAAATTTTTACTAAAAGGGAAACTTATGCAAGGCATATACAAAGGAAACATCATGTGGCAGAAGATGGTATCAAACAGGAAAATTTTAATGATAATTATTTGGAAAGTTGTAAAAATGAAGAAACTGGTGAAATCACATGTAAAGAATGCCCTCTAGTCTTTTCATCAGTTAACTTTTTGAAACTACACATGAGAAGAAAGCATAATGCATTAAGAGATGATTTCAGATTGAAATGTAGGATTTGCAACTTATCTTATGATAAAATTGAGAGCCTTAAGAGGCACGTGCGAAGAAAACACGATAAGGGTTCACATTGCGAAGTTTGTAACAAGCAGTTTGACACTCGAGAAATGTATCTAAATCATTCTCATGTAAAGGTGATAAAGGAATGCAATATTTGCGGTCTCATATTCGCATCTCAGGGTGGTTTAGCCAAGCACATGAGATGTACACACAAAATAGACTCTGCTAAAACCGTGTTCTGCAATCTTTGTAACGAGGGTTTCCACGATAAACGTCAGTTGAAACCACATTTTATGAAAGTGCATTTACAAGTTTCTTACACTTGTCGTTATTGCAAAAAGGTTTTCAAAGCAAAAGAGAGTTACAGACGCCACATTTTATTCAAGCACCCAACTACAAATCACTTCAATGCTCAGCTGCAAAAATGTGATCAGTGTAACGAAACATTTAAAGACGAATTTGAACTATGTCGACATGTTAATATGGCTCATTGTCGCCCGGAAGATATGACTAAAGAGGACAGAGAAATTATGGTAGTAAAAAAAGAAGATGTTGATATCAAAGATTGCTTCCAATGCATCAAGTGTTCGGATACATATTTAACATGGGAGCAGTTAAAGATGCACTATGAGCAAAATCATCACAATGTAGACGAAACACAGTGTCAAATTTGTGGGGAGATCCTCCCTGGAAATGAACTACAGAAGCACATAAAGAATCTTCATACAAATAATGAAATGCAGTGTAAATACTGTGAATTCAAGACATCTATTAGGGTTAGTTTAACACAACATATGTTGAGGCATAAAAACGCTGAGACTATACATTGTGACTACACCGGTTGTAGATATAAAACTTTTTACGAAGGTGCTATGGAAAAACATAAAAGAAAGCATGCAGACCAAGGAGTAAAACTCCAATGTACGCAATGTCCGTTCCAGACTATGAATAAATATATCTTGAAATACCACGAGGAGGCCCATGAGACTGGGAAAAAGAGGTATATGTGTGATCAATGTGAATATGCAACCATCCTCCCAGCCAATTTAGTGCAACACAAATACAAACATTCAACGGAGAAGCGGTTCAAATGTGAAGTGTGTCCGTTCGCTACAAAATATAATACATCACTACGGTTCCATGTTAGGAAAAAACACTGTGATCTCCCGACATTCAGTTAA
- Protein Sequence
- MALGQRSEYSTFDTFICLIYWYLNWLLKIAIMADIDVKVKLEEHGETRKDPTSFLPEEPMSYEIKKKKKKKKRQQEDPFKDIDDKMDIKIEPITLLDPEVKIKVEDIEVELDFHDFADNSGMMQEGPDKQETVEPAVKIEQQNHEAVLLTFESVINEKSVLEQTKMFPYNNAIPNIAPTHICKVCHLVFQSKKTLRMHQRRKHKSFRKSFKHICDHCGMSYEMKNSLVAHIKRKHGPNSMPDDREERTCEICALVFKGMTRLRMHMRRKHGSFQESFKHICKDCGLTYDKYRSLIVHIQRKHSNDKKPEINQWYNCSFCPKIFTKRETYARHIQRKHHVAEDGIKQENFNDNYLESCKNEETGEITCKECPLVFSSVNFLKLHMRRKHNALRDDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKVIKECNICGLIFASQGGLAKHMRCTHKIDSAKTVFCNLCNEGFHDKRQLKPHFMKVHLQVSYTCRYCKKVFKAKESYRRHILFKHPTTNHFNAQLQKCDQCNETFKDEFELCRHVNMAHCRPEDMTKEDREIMVVKKEDVDIKDCFQCIKCSDTYLTWEQLKMHYEQNHHNVDETQCQICGEILPGNELQKHIKNLHTNNEMQCKYCEFKTSIRVSLTQHMLRHKNAETIHCDYTGCRYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQTMNKYILKYHEEAHETGKKRYMCDQCEYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00050200;
- 80% Identity
- -