Sver011312.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Shargacucullia verbasci
Gene Symbol
-
Assembly
GCA_947562105.1
Location
OX387292.1:2995647-3008148[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0022 0.17 12.7 2.6 3 23 242 262 240 262 0.97
2 11 0.16 12 6.8 9.4 1 23 268 290 268 290 0.95
3 11 5.7e-05 0.0043 17.7 5.8 1 23 296 318 296 318 0.98
4 11 0.00043 0.032 14.9 1.5 1 23 324 346 324 346 0.97
5 11 6e-06 0.00046 20.8 1.0 1 23 352 374 352 374 0.97
6 11 1.9e-06 0.00015 22.3 0.1 1 23 380 402 380 402 0.98
7 11 6.9e-05 0.0052 17.4 0.4 1 23 407 429 407 429 0.96
8 11 0.66 50 4.9 3.6 3 19 437 453 436 459 0.90
9 11 3.4e-05 0.0026 18.4 0.4 1 23 551 573 551 573 0.97
10 11 8.8e-05 0.0067 17.1 1.4 1 23 783 805 783 805 0.96
11 11 3.6e-05 0.0027 18.3 4.3 1 23 815 837 815 837 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACTCCTAACAATGTTTCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTTCGGCGGATCTTACGAAGGGCGAGGTGGAAACACCGAGCAGCTTGAGCTATACTTTGGGAAATACGGTTTCCCCAGAGACAACCTTGACTGTTATGTCCCACAAAACACCACAGGTCCAAGAAAAAGTGGGTGCAGTTACAGTGGCAGTATCAAACTCAGGAGCACAATTAACAAGAGTTGTGACAACGGGGACGCCAGTCGCAGGGCGACGCGCTATGTTTGTAGTGAATGATGCTCCAGCTCATACTTTGAACAGGGTGTCACAGCAGAATCAGACCACTACTATACACACGAACTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGCTAACAGCGGAAGAATGCAATGAGATCTTGATGAAGCGCGCACTCCAAGCGCAGGGCATCGCGACCCCAGTGATAGACGCGTCGCAACTGAACCACACGATATTAAACGGCGGGCTGAAGAGCCTGGCAGAGGCGACGTCACAGCAAACGCAGGCAGATACTATTCAAACTACGACCGTACATCAGCACCATTTGTTACATACGAAGCAGGAGCCTGGAACAGCTAATAATTCGCCTAAAACGGTGTATTCTCAGACGGAGCTGATGAACACCAATTCGGTGATGTCGACGGCTCCCCCGGCCGTCAAGGAGCGTCCCTACGGGTGCGATGAGTGCGGCAAGTCCTTCCTGCTCAAACACCACCTCACGACGCACGCGAGAGTGCACACTGGTGAGCGTCCGCACGCGTGCGTTCACTGCGCCAAGACATTCGCGCACAAGCATTGCCTCAACACACACCTCTTACTGCACACTTCTAACCGTCCGTTCCGCTGCCCCGAATGCAAGAAATCCTTCACGCTCAAACACCACCTACTCACACATTCTCGGGTGCACAGTCGGGAGCGGCCGTTTGTGTGTAACGAGTGTGGGCGCGGGTTCCCTCTGAAGCGCCACCTGGTGACGCACAGCAAGTACCACGCCGGCGAGCGGCCCTACGTGTGTAACGATTGTGGAGAGAGTTTCGCGCAAAAGGAGCACCTCGTAATGCACAGTCGTTTCCACGGCTCCCTGTCCCCCTACGTGTGTCCCGACTGCGGCGTGACGTTTGCGCGCAAGTTCCAACTGGTCAACCACGGGAGAGTGCACGGCAGAGTGCCCCACGCTTGTCCCGTGTGCGGCAAAGAGTTCCTACAGAAGAGGACGCTAGTTGCGCATATGAAAATCCATACAGGAGAGGGTGCGGTAGCATGCTTAGAATGCGGAGAAGCATTCAAATGCAAGTCTGAATTgcagcaacattgcaagatgacgcggcactgtctcaacacacaaacgcaacagcagcaacaacaacaacaacagcaacagcagcaacaacaacagcaacagcagcagcagcaacaggcgcagcagcaagcgcaacaacaagcgcaacaacaagctcaacaacaggcgcaacaacaagcacaacaacagcaacagcagcagcaacagcaagcaacTGTGATAAAACAAGACGATTTTAAACCGCAAATTGTACAGGTGATAGGAGCAGATGGTCAAATTGTGACAGAGAAGACGACCCCTGGATACGCGTGTCCCGAGTGTGGCTCATGTTTCAACACAAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGACTCGTCGCCGCCGCGCAGCACCAGGCGCACATGACGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGACTCGTCGCCGCCGCGCAGCACCAGGCGCACAGTAAGTTACTGCATTATGTTAGTGACGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGACTCGTCGCCGCCGCGCAGCACCAGGCGCACACCCGGACTCGTCGCCGCCGCGCAGCACCAGGCGCACAGTAAGTTACTGCATTATGTTAGTGACGCTGCACGTGCGGCTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGACTCGTCGCCGCCGCGCAGCACCAGGCGCACAGTTTCATTGTTCCAGATCAACCGATACAAATAATCTCGTCAAACCCCAACAATGTTGTTCATACGCAAGTTATAGCTACGAATCACCATGTAACGCCACCTCGGCCGAAGGTTCACTTTTGTGGCGATTGCGGGAAAGGATTTGCGGCTAAACATGGTCTATTAGCGCATCAAAGAAGGCACCCGGACGGCAGCTGCACGTTGCGCACGCACGTGTGTGACCAGTGCGGGAAGGCGTTCTTCCAAAAGAACCACCTCATGCTACACCAGAGGCAACACATGGACCTGCCGCCTAGAAGTacacaagttcaaccagtgacgcaacaagcgcagcaacaggcagcgcaacaagcggcacagcaagctgcgcaacaagcgcagcaagtgcaacaacaggtgcaacagcaagtgcaacaacaagtgcaacagcagcagcagcatcagcaacaagtgcagcatcagaacagcTTGGAGATGGACCAGCAAGACCATCAGCAGGCTACTCATATACAAGTTGTGACAAACAGATCAGGCCAAGTGATAGGCAACCAGATCGTGGTGGGCGCGGTGGGCGTGGGCGGACGGCGGTTGGTGGCGCCGCAGCTGCACATCGTGGGCAGAGACATCAAGCCCACCATCGCTCACCTTACGCACAAACACCACGCCAGGCAACATACCACCAGTGGTGACGCAAAAGAAGTCGGCGGCCTAGTCTTATCAGCGGGGAGGACAGGTCTCATCAAGTATGAGATCTCACTCCCTCCCCCTACATCTGTGGTACAAGTGCAACAACTAGACTGA
Protein Sequence
MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNSGAQLTRVVTTGTPVAGRRAMFVVNDAPAHTLNRVSQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEATSQQTQADTIQTTTVHQHHLLHTKQEPGTANNSPKTVYSQTELMNTNSVMSTAPPAVKERPYGCDECGKSFLLKHHLTTHARVHTGERPHACVHCAKTFAHKHCLNTHLLLHTSNRPFRCPECKKSFTLKHHLLTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCNDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACLECGEAFKCKSELQQHCKMTRHCLNTQTQQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQATVIKQDDFKPQIVQVIGADGQIVTEKTTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQHQAHMTLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQHQAHSKLLHYVSDAARAAARGRPHVRDGPVRAHGRAAARTRRRRAAPGAHPDSSPPRSTRRTVSYCIMLVTLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQHQAHSFIVPDQPIQIISSNPNNVVHTQVIATNHHVTPPRPKVHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSTQVQPVTQQAQQQAAQQAAQQAAQQAQQVQQQVQQQVQQQVQQQQQHQQQVQHQNSLEMDQQDHQQATHIQVVTNRSGQVIGNQIVVGAVGVGGRRLVAPQLHIVGRDIKPTIAHLTHKHHARQHTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01539009;
90% Identity
-
80% Identity
-