Sver008875.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387293.1:3997082-3999897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.9e-06 0.00022 21.8 7.3 1 23 240 262 240 262 0.98 2 11 0.00053 0.04 14.7 0.7 1 23 268 291 268 291 0.95 3 11 0.00019 0.014 16.1 0.3 1 23 301 323 301 323 0.98 4 11 0.027 2 9.3 1.0 1 23 330 352 330 352 0.97 5 11 0.92 69 4.5 3.3 1 23 358 380 358 380 0.97 6 11 8.6e-05 0.0065 17.1 1.6 1 23 386 408 386 409 0.95 7 11 0.0013 0.096 13.5 1.2 2 23 415 434 414 434 0.97 8 11 4e-06 0.0003 21.3 1.3 1 23 440 462 440 462 0.98 9 11 9.8e-05 0.0074 17.0 1.4 1 23 468 490 468 490 0.98 10 11 2.3e-05 0.0017 19.0 0.9 1 23 496 519 496 519 0.97 11 11 0.041 3.1 8.7 0.6 1 20 525 544 525 546 0.93
Sequence Information
- Coding Sequence
- ATGGCTAACGTGAAGAGTAGATTAAAATCACCCAAAAGTGCCTCTAAGAAGATAAAGAAGAAAAATGGTAAAACAAAAAAAACGTCAACAGGTCTTAAAAAAACTCAGCTGCCGACAGACGCTGCAGAGTGCCATGTAGTCATGAAACGACCGAGCAATCGGCAGGTCATGACACCAGATGAAAAAGTACAATATATACTGCAAAACGGACATAAAATCAAAGATAAAATCTATATTAAACCCCCTGTACAAACTACAAAACAACCTAAGTTTTCTGAAACATCAATGTTATATCGTAGGAAAAGGGATGTTGATTTACCTCTAATGACGAATAGTGGTCGAATAAAAAAGAAAAAGAAATGTAATATGAAACTTATTAATAGTATATTGAAGAATGAACTGTTAATAAATGACAGTGTGAATACTAAAAATAGTAAAAACCTTCTTCGTGCACAACCGTTGCCTCTGCCATCTGTACCGATTGTGAACAATAACAATGACAATGCAATAACAGACCAAAACAATACTCCCAAGGACTTCCCTGGTCATAACAATGGTGATTTGTCTACTGAAATGAGAGACGACTTCCCTGATAATGCAGATCATCCCAATGAAATAGTTGAAAAACCCAAAAAAAATAAAAAATTCCCCAAAAAGAGAAAATATAAACCAAAAACTGTAGTAATGAGTGATGGATTAGTATTAAGATTACCCTGTTTTGAATGTGATTATTGCCATAAAACATTTAACAGAAAATGTTCCTTACGCAGACATATAATGATGCATCTTGGGATAACGCTGTTTAGTTGTCCCCGTTGCCCTCAAGAGTTCAGGAGCCGCTACAACATGTCAGTTCATGTGGACCGTTACCACAAACCAGAAACAAATGATCCTGATATTTTTGTGTGCAACTACTGCGAAGAACCGTTTCTGGTAAAGAAGAACTTGAACAAACATATAGCCACTCACATGCCCTCTGAGACTTCGTTTAAATGCATTTACTGTGAAGAGGTATTCCCATCCCATATCATGTTAATGCAGCATGAGCAGAAACATTTAGTTGAAGGGCGATATCAATGTACACTTTGCAGTTTGAGTTATCGTTGTCGCCCCCGCCTGTACGAGCATATTAAAAGCCATTTGAAAATCAAAGAGTTCATCTGCCAGTATTGCGGCAAAGAGTTTTTAAGGCAAAACTCACTGACGCGGCATGTTGAGATACACCATGGCGGTTATAGAATTGTGTGTCCAATATGCAAGAAGAGTTTGAAGGGCCATTTGACTGAGCATATGCGTACACATGAGAAGAAGCGTCCACATAAGTGTCCTGAGTGCGGACAGCTGTTCACGCAGTCTACTCAATTGAACGTCCACCGTCGAGCGCATACTGGCGCCAGGCCGTACCCTTGCCGAATATGCAGCCGCCTGTTTTCGCATTCCAATGCTCTCATGTTGCATATCAGACGTCATACTGGAGAGAAACCCTTTCCCTGTGCTATGTGCCCAATGTCCTTCTCTCAATTACCACATATGAAAACACACATGCGTAAAATACATGGTAAGGAGAACCCATACAAATGCTCCAATTGTGATTCCTTTTTCAAACTCAAAGCACAGCTTGATGTTCACGAAAGTAAATGCACAAAAGGAAAAGGTAAATCTTTAAAATTTAAAAAGAAAAAAATCAAGGATGGCAAAGAAATAGAAATATCGGCGCCGATGTCTTTGTCCCGAATGAGGTTCCTGCTGGCTCTACTCCTGACGATGATTGCAACCAAAGAAAGACTCAAATATTTAGGTTTCAACAAACGGCTCATAGACGACCTCCTTGTCGAATCTCTGGAGGCTATGGACCAAACTCCTTGCAAAAACGAGACTTTCTCCCCGCTAAAGCGACTAAGGAGGAACATAAAGATGTTGCTCATCGGGACGGTACCCAAGGATCAGATGGAGAAATTCCAGAAGGAGAATAAGACAACTGAAGACATCCTGGAACTGTTGACGAATGAGAAAGATAAGTAA
- Protein Sequence
- MANVKSRLKSPKSASKKIKKKNGKTKKTSTGLKKTQLPTDAAECHVVMKRPSNRQVMTPDEKVQYILQNGHKIKDKIYIKPPVQTTKQPKFSETSMLYRRKRDVDLPLMTNSGRIKKKKKCNMKLINSILKNELLINDSVNTKNSKNLLRAQPLPLPSVPIVNNNNDNAITDQNNTPKDFPGHNNGDLSTEMRDDFPDNADHPNEIVEKPKKNKKFPKKRKYKPKTVVMSDGLVLRLPCFECDYCHKTFNRKCSLRRHIMMHLGITLFSCPRCPQEFRSRYNMSVHVDRYHKPETNDPDIFVCNYCEEPFLVKKNLNKHIATHMPSETSFKCIYCEEVFPSHIMLMQHEQKHLVEGRYQCTLCSLSYRCRPRLYEHIKSHLKIKEFICQYCGKEFLRQNSLTRHVEIHHGGYRIVCPICKKSLKGHLTEHMRTHEKKRPHKCPECGQLFTQSTQLNVHRRAHTGARPYPCRICSRLFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMRKIHGKENPYKCSNCDSFFKLKAQLDVHESKCTKGKGKSLKFKKKKIKDGKEIEISAPMSLSRMRFLLALLLTMIATKERLKYLGFNKRLIDDLLVESLEAMDQTPCKNETFSPLKRLRRNIKMLLIGTVPKDQMEKFQKENKTTEDILELLTNEKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -