Sver001451.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387287.1:4909542-4914421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00057 0.043 14.6 0.0 5 23 143 161 141 161 0.96 2 11 0.014 1.1 10.2 0.3 2 23 166 187 166 187 0.97 3 11 0.96 73 4.4 11.0 2 23 194 216 193 216 0.96 4 11 0.00034 0.026 15.2 0.4 2 23 225 247 224 247 0.94 5 11 1.2e-05 0.00094 19.8 2.3 1 23 252 274 252 274 0.98 6 11 0.00092 0.069 13.9 2.9 1 23 280 303 280 303 0.96 7 11 0.74 56 4.8 6.6 2 23 309 330 308 330 0.94 8 11 0.0022 0.17 12.7 0.1 2 23 334 355 334 355 0.97 9 11 8.9e-05 0.0067 17.1 0.1 1 23 361 383 361 383 0.98 10 11 0.00064 0.049 14.4 0.7 2 23 390 411 389 411 0.98 11 11 2.4e-07 1.8e-05 25.2 1.6 1 23 417 439 417 439 0.98
Sequence Information
- Coding Sequence
- ATGGAGATGTGTAGAGTATGTTTATCGACAGAAAAAGAAATGCTTCCACTGAATGAGACTTTCATTGATGGATATAACTTGTTGACTAATCTTTGTATTACTCTTTTAGATGGAATGCCACAATATTCATGTCAGTCATGTTTAGACACGGTGAAGTATTTCATAGAATTCAGGGAGAAGTCCATAATATCAGAAAACACATTGAGAGAGATTATTAATTCTAATGTTAAAGCAGAAAAAAAGACACATGTTATAGAAATAGATAAGAAGCCTACAAATTTTTTAAATGATGAAATAAACTTATTGGCCATAAAGTCTGAAATAAAGGAAGAAACTGATGATTCTTTATCGGAAAATATTGAAGTCACATTTGAAGAATATGATGATGATATTAAGAACCTTATTGTTAAGAAAGATGAAGAAGGTATTTGTCCTAGGACATTTGAGAATAAAAATGACTTGAACAATCATCTAGAAGTTCACAAGAATGACAGGCAATGTGATCTCTGCAGAGAACAACTTAACAGCCTGTCCCAGCTTCTAGCACACAGACTGATGCATGTGCCAATGAAACAAAATAAATGTCACATATGTGAAAAAAGATTCAGATGTTGCCAATACCTGGAACATCACTATAGAAACATGCATATTGAAGGTGATGATAGAAAGCTTTACTGTAAATATTGTCCATTAACATTTGATTTACCAAAAAAACTCAATAGTCACATGCTGCAAGTACATTCCAGTATTAAATATTTTTGCGACATGTGTTCGAAAGGTTTTCAAAGCAAAACTAACTTGAAGTCGCATATAAAGTCACATAGTGAGAACAAAGCTTATGTTTGTGATATGTGTGGATTTTCCTGTAAACATAGTGGTGGATTAAACGATCATAAAATAAGACGACACGCCCCGAAAAAGGTTTACTGTAAAAATTGCAAACGACCATTCTCAAGTCAAGAGCAACATGATAGACATAAATGTAAACACAAGTTAAACGTGTGCCCCATATGTGGAGTGCAGCTCAATGGAAGTTCCAGAttatcgaggcacatgATAAGTCACAGCGACATTCCACGGTACGAATGTACAAGGTGTCCAGCTAAGTACAAAACAAAGGGCGCTCTGATAGCCCACATAGACCGGCACGATGGCAACCGTACCAAGCAGTGTGAATACTGTCCCGCCAAATTTTACACTACCACCGTCTTGATCAAACATCGTCGGATACACACAGGTGAAAAACCTTATGTATGCAAAGTGTGTAACAAAGGGTTCACGGGCAACCACAACCTCAAAGTACATATGAAAGTGCACGGAGAATATTTGATTGTTAAAAAGAATAGTGAGCAAGTGGATTTAACTAATGTTACCAATTGA
- Protein Sequence
- MEMCRVCLSTEKEMLPLNETFIDGYNLLTNLCITLLDGMPQYSCQSCLDTVKYFIEFREKSIISENTLREIINSNVKAEKKTHVIEIDKKPTNFLNDEINLLAIKSEIKEETDDSLSENIEVTFEEYDDDIKNLIVKKDEEGICPRTFENKNDLNNHLEVHKNDRQCDLCREQLNSLSQLLAHRLMHVPMKQNKCHICEKRFRCCQYLEHHYRNMHIEGDDRKLYCKYCPLTFDLPKKLNSHMLQVHSSIKYFCDMCSKGFQSKTNLKSHIKSHSENKAYVCDMCGFSCKHSGGLNDHKIRRHAPKKVYCKNCKRPFSSQEQHDRHKCKHKLNVCPICGVQLNGSSRLSRHMISHSDIPRYECTRCPAKYKTKGALIAHIDRHDGNRTKQCEYCPAKFYTTTVLIKHRRIHTGEKPYVCKVCNKGFTGNHNLKVHMKVHGEYLIVKKNSEQVDLTNVTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00050196;
- 90% Identity
- -
- 80% Identity
- -