Basic Information

Insect: Shargacucullia verbasci
Gene Symbol: -
Assembly: GCA_947562105.1
Location: OX387310.1:1095487-1119746[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0068 0.52 11.2 0.9 1 23 220 242 220 242 0.98

2 12 0.00089 0.068 13.9 1.4 1 23 249 272 249 272 0.92

3 12 0.044 3.3 8.6 2.0 1 19 276 294 276 298 0.91

4 12 0.0014 0.11 13.3 4.0 1 23 303 326 303 326 0.98

5 12 0.00029 0.022 15.5 1.7 1 23 330 353 330 353 0.95

6 12 0.16 12 6.9 0.0 3 20 370 387 369 388 0.95

7 12 0.0012 0.094 13.5 0.2 2 23 402 423 401 423 0.97

8 12 5e-05 0.0038 17.9 0.8 2 23 441 463 440 463 0.96

9 12 5.7e-06 0.00043 20.9 1.9 2 23 473 494 472 494 0.97

10 12 9.1e-06 0.00069 20.2 1.8 1 23 500 522 500 522 0.98

11 12 1.4e-06 0.00011 22.8 0.2 1 23 528 550 528 550 0.98

12 12 2.8e-06 0.00021 21.8 2.2 1 23 556 579 556 579 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0068	0.52	11.2	0.9	1	23	220	242	220	242	0.98
2	12	0.00089	0.068	13.9	1.4	1	23	249	272	249	272	0.92
3	12	0.044	3.3	8.6	2.0	1	19	276	294	276	298	0.91
4	12	0.0014	0.11	13.3	4.0	1	23	303	326	303	326	0.98
5	12	0.00029	0.022	15.5	1.7	1	23	330	353	330	353	0.95
6	12	0.16	12	6.9	0.0	3	20	370	387	369	388	0.95
7	12	0.0012	0.094	13.5	0.2	2	23	402	423	401	423	0.97
8	12	5e-05	0.0038	17.9	0.8	2	23	441	463	440	463	0.96
9	12	5.7e-06	0.00043	20.9	1.9	2	23	473	494	472	494	0.97
10	12	9.1e-06	0.00069	20.2	1.8	1	23	500	522	500	522	0.98
11	12	1.4e-06	0.00011	22.8	0.2	1	23	528	550	528	550	0.98
12	12	2.8e-06	0.00021	21.8	2.2	1	23	556	579	556	579	0.98

Sequence Information

Coding Sequence: ATGAATAAGTTAAAAATGTGTAGGATATGTCTGGTGGAAAATGTGCGGATGCATGTGGTACTCAACAGAGAGCTCCAAGCAATATACGAAAAACTTACAAACATTCCGTTTGAAACGGAAAGTGATACAGGTAGACCGTTGCTGGCATGCTTCATTTGCTACACCAGACTGAAGAACTGTTATACATTTAGCATGAAATGTCTTGAGTCCGAAGATGTATTATCGCAGATGTTTAATGAACATTGCAAGAGAAAACCCAACGAAATTCCGCAAGTACTCCAAACTTATGGGTTTACAAAAACTGAGGTGCAACAGATAAATATTATTGATATCTGTGAACCGAATATTGTTGCTACAGTTAAAAAAGAAATGGTGAGCGAGAGAGAGAATGTTGAATTGAAGCAGGAACAACATAGAGACGAACTCGAACCTCTGGACCACAATTATCTAGATTTAGAAGATCAAACTCCGTCTGATTCAGAGGATGATGTGCCTCTAACAATAATTAAGAATGAAGTAGCACAAGTTAAGAAGAAGAGGAAAAAACTAAACAAGAAAAGACTCAAATTTGACTCTCAAGAAATACTCTTGTCTAAAGAAGAACAAATAGAGAACTTAATGGCTCGATGTAAATCTCAGAACTATGCAAATTCACCGTTTAAATGCGATATGTGTTACAAAGGGTTTGTTGATATGAAGGCGTATGATAATCATAGGATAAAACATGATGTGCGTAGCGGCAACCACATATGCGAGATTTGTCAAATGCGCTATCGCACTGCGCAACATCTGCGCACGCACGTCGCCAATGCGCATGCGCGGTTGTTTAAATGCAACATATGTGGACATACTACCCACACCGCAAGCCAAGCTAGAGTTCATGATAAATGGCACAAAGGCCATATATACGAATGTCAGCTCTGCAGTCATACATTCAGAAAACCCACATCATATCTTTCTCACTTGCGCAAGACACATCCGACAGAGCACGTGTGCAATATATGTGGCGAGAGTTTCGTGGGCAATCATGGGCTACAGATGCATAAAAGCAAGACACATCAGAACGACAAGAAGAGAGATCCAGAAGAGCCGGCGTCAGAACGCTTCTGTGCCGAATGTAACTTGCAATTCGCTAGCTTAGAGGCTTGGGAACGTCACATACTATGCTCCATCAAACATACCCTCAAGAACGAACATAGTTCTCAGTGCTTAATTTGCGAGTGGCGTTATACTGGCAACATTAGCTTGTCGACGCACATGAGGGAGCATGAGAGAAGACTACGACAGTCTCGGAAGATAATCACCAGCGACCAACATCTCAGATGTCAACAGTGCGGCTCTAACTTCGTGAACAGATCCAAACTCCAAGCCCACATCAACAGGACGCATTTAGGATTGAAATATAATAAAAATATTGTCTGTGAAGTCTGCGGGAAAAATTGTACATCAAAAGCAACTCTCAAGTACCACCAACGCACCCACACTGGCGAGAAGCCGTACTCCTGCGCATCTTGCTCCAAACGCTTCTCTGATAGCAACCAACTGAGAATACACACACGCACGCACACAGGGGAGAAGCCATACGTGTGTGCGGCGTGCGGGAAACGGTTTAGTCAGAAACCGGCTCTGAATAGACATTATAGAGTACACACCGGCGCAAAACCCTATACTTGTCAGTATTGCTCTCGAACATTTAGCCAGTCTAATTCCTTGAAACTACACGTCAAAACTGTGCATTTGAAACAGCCAGCTAACAGTAGGAAGAATAAAAATAAAGATTTGACATTAGATACTAAGACAGGAGATACTGAGAAGAATGGACCGGAATTGTTACACCCTGTATAA
Protein Sequence: MNKLKMCRICLVENVRMHVVLNRELQAIYEKLTNIPFETESDTGRPLLACFICYTRLKNCYTFSMKCLESEDVLSQMFNEHCKRKPNEIPQVLQTYGFTKTEVQQINIIDICEPNIVATVKKEMVSERENVELKQEQHRDELEPLDHNYLDLEDQTPSDSEDDVPLTIIKNEVAQVKKKRKKLNKKRLKFDSQEILLSKEEQIENLMARCKSQNYANSPFKCDMCYKGFVDMKAYDNHRIKHDVRSGNHICEICQMRYRTAQHLRTHVANAHARLFKCNICGHTTHTASQARVHDKWHKGHIYECQLCSHTFRKPTSYLSHLRKTHPTEHVCNICGESFVGNHGLQMHKSKTHQNDKKRDPEEPASERFCAECNLQFASLEAWERHILCSIKHTLKNEHSSQCLICEWRYTGNISLSTHMREHERRLRQSRKIITSDQHLRCQQCGSNFVNRSKLQAHINRTHLGLKYNKNIVCEVCGKNCTSKATLKYHQRTHTGEKPYSCASCSKRFSDSNQLRIHTRTHTGEKPYVCAACGKRFSQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANSRKNKNKDLTLDTKTGDTEKNGPELLHPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050163;
90% Identity: -
80% Identity: -