Sver003784.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Shargacucullia verbasci
Gene Symbol
ham
Assembly
GCA_947562105.1
Location
OX387296.1:8268961-8303512[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.33 25 5.9 0.0 2 23 270 292 270 292 0.95
2 9 0.00048 0.036 14.8 0.7 1 23 299 322 299 322 0.93
3 9 1.7e-08 1.3e-06 28.8 0.1 1 23 328 351 328 351 0.96
4 9 1.5e-06 0.00011 22.7 1.7 1 23 357 379 357 379 0.95
5 9 5.2e-05 0.0039 17.8 6.1 1 23 385 407 385 407 0.99
6 9 0.00011 0.008 16.9 0.4 2 21 415 434 414 435 0.94
7 9 1.2e-08 9.4e-07 29.2 0.7 1 23 830 852 830 852 0.98
8 9 4.5e-07 3.4e-05 24.3 1.7 1 23 858 881 858 881 0.97
9 9 1.7e-05 0.0013 19.4 3.2 1 23 887 909 887 909 0.98

Sequence Information

Coding Sequence
ATGGAGTTTATCGAATGCGCGTGCGTGCCTGCGCTTGCGTCGGAGACTAGACAGCGCGTCTACGCGCATTACTCAGCAGACAGCCAGGAATCTGGCAGCCCTCCGCCGAGCCCGACCGACTCTGCCACATCAGAATCAGCGCCCACCCTAGTTCATATCAAACAAGAGAACATGCCGCCTGGAACAGACATCAAGGAGTACTACGGAACTCTGGACTTCGGCCTCCCAGACACATACTTATCCCCAAACTTCCCAGACTATGGACGTCAATATCTATCAAGACCTTTAGATCTGCCAAACCAAAGGTTCCTAGACGCAAAAAGTCCGAAAGACAAAGAGGATTTGAAAGATGATGATCCTGGGGAACGAGAATTTGATTTACCGACCGAATTGATGTTCAAAAGTGGAGGGATATTTGCTAAAGCGAATATTGCTAATGGAAAGCAATATGGACCTTTCATTGGGAGATTGGAGACTCAGGTTAAGGATAGGCGATTTGCTTGGGAGGTGCGGGATAAGAACGGTATCGGTGGCTGGCTGGACGGGACCTGTGAGAGGAGCAACTGGCTCAAACTTGTTCGTTCTACCAACTACCCACATGACGTCAACGTGCAGCACGTCTTACAGGCTAACCAAGTTTGGTACAAGGTGATACGTGACGTCCCGCCGGGCCAGGAGTTGCTGCTGGGCCCACGGACTCCTCTGCCGCTAGATGAGATATTCCCAGAATTTAAACGCTTTCATTCTTCAGACAAGTTCAGCTCGCTGCCTCAGGGGGAAGACGAGGAGCGGGAGGACGCTGAGCCTCGGTGCAGCTTCTGCGACATACCTTTCCCTAACATTGACATTCTCGATCGCCACTTGATAACGGAGCACGCTCAGCCGGCCGCTGCGTTTCATTGCGAACTTTGTAACAGAGCTTACAGCACTCGTGCGCTGCTCCTGCGACACCGTGCGCTCGCGCATACTGACATCAGAAAATATCCCTGCGAAAATTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATTCGCGCGCAGCACGTGGGCGCCCGCAGCCACGCATGCCCCGAGTGCGGCAAGACGTTCGCGACCTCCTCCGGCCTCAAGCAGCACACACACATACACTCCAGTGTCAAGCCCTTCCAGTGCAAGGTCTGCTTTAAGGCTTACACCCAATTCTCCAATCTCTGCCGTCACAAGCGAATGCACGTCGCATGCAGAGCACTCGTTGAATGTGGAAAGTGTGGACAGTCCTTCACCTCATACGCCTCTCTTACCAAACACAAGAGATTCTGCGATACCGCTGCTGCTGCTTCAGTGAACCTTCGAGGACAAATGCCCCAAGGCCTACCGCAACTACCGTCATTACAAAACGTCGGAATGAATAACCCAAATAACACCAGCCCTTTCCCGATGTACAGGGGACCTACTCTGCCCCTTCCATACAACACATTTGCTCACTACCCAGCTTTATTCTCTGCGGCTGCAGCTGCCTGCCCACCAGAGTTCCTCAGCCCTTTGCTCTTCAATGTACAAGGGGCAAGACTCGCCATGGAACATGACATGGCCATGTCTAATGCCAATTTAGTATGTAAACAAGAGGGCCGCTTATCAGTTAAAAGTATGGATAGTTCAAATTCTTTGGAAGACAAAAAGCCTAAAGATTTGGATTTCGAAAACAAAAGGGACAGCTACAGTTCCGACAACGCTACACCAAATAAGACACAGAGTCTATATTCAAAGCAGTCACCACCATCAGGCGAGGAAGCATCTTCTCAGCAGCGACCATCACCAGTGATGCCACTGCCTACACCCATTGCTCCATTCAATTTCCCAAGAGACGAAATCAAACGGAAGTCTCCTTTCAATTTTCCTCTTAATCTAAATAACAACGACATCCAAGGAAATAAATCTTTATCACCGCTACCTAAGGATTTGTCAAAAAATGTTAAAATGGAAGAGGATAAGACCTCAGAATATTCTGATGTTGAGGAAGACACGAAGAAAGATGACGTTGACCAGCCTTTGGATTTATCGGTGACCAGGAAGCCGAGTGATAAGGATTCTGAAGTAGACAATGACGACCGCTCCTTTCGCAACTCCGTCAAGTCTTATTCGCCGCCTGAAAGCCCAGCAGAGCGCAGCAAGACGCCTGAAAACGACACGACAGACGTCGACGTGGAAGGCGTAGAACCTAAAAGGGACGAATCACCACCACACCTTGTGTCTCCACCTCTTGCATTCCCCATGCCAGTTCATCCGCAGCACAGCAATATAATCGATGCCATGTATCGGCCCCGATTCCCAAATTTCCACTCTACTGAATCTATTTTGAACTCGACGCACTCTCCGTACGTTCCGAGTCCATTCAATTTTTTATCCCCACTTCTCGGTACGGATGGGCCCGACAGACAACCTAGCGCGTACGCTAAGTTCCAAGAGCTGAGTGCTGGATCTGGTAAGCTGCGTGACCGATACGCTTGCAAGTTTTGCGGCAAGGTCTTCCCTCGAAGCGCTAACCTGACTCGTCACTTGCGTACCCACACCGGAGAGCAACCATACAAATGTAAGTACTGCGAGCGTTCGTTCTCAATCTCGTCAAACCTTCAGCGGCACGTGAGGAACATTCACAACAAGGAGCGGCCATTTCGGTGTCCCTTATGCGAAAGATGTTTTGGCCAGCAGACGAATCTCGACCGTCATTTGAAGAAGCATGAAGCTGAAGGTGGCGATTCTCCCAGTTCTGCAGATACGGAGAGGGAGGATGCGTATTTTGATGATATTAGATCGTTCATGGGTAAGGTGACGTGTTCCCCGGGCACGCGCTCCCCGGCGGCGACGCCCCCGCACGGCACGCACGGGCCGCGCCCGTCACTGGCCATCTCCACATAG
Protein Sequence
MEFIECACVPALASETRQRVYAHYSADSQESGSPPPSPTDSATSESAPTLVHIKQENMPPGTDIKEYYGTLDFGLPDTYLSPNFPDYGRQYLSRPLDLPNQRFLDAKSPKDKEDLKDDDPGEREFDLPTELMFKSGGIFAKANIANGKQYGPFIGRLETQVKDRRFAWEVRDKNGIGGWLDGTCERSNWLKLVRSTNYPHDVNVQHVLQANQVWYKVIRDVPPGQELLLGPRTPLPLDEIFPEFKRFHSSDKFSSLPQGEDEEREDAEPRCSFCDIPFPNIDILDRHLITEHAQPAAAFHCELCNRAYSTRALLLRHRALAHTDIRKYPCENCPKVFTDPSNLQRHIRAQHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCKVCFKAYTQFSNLCRHKRMHVACRALVECGKCGQSFTSYASLTKHKRFCDTAAAASVNLRGQMPQGLPQLPSLQNVGMNNPNNTSPFPMYRGPTLPLPYNTFAHYPALFSAAAAACPPEFLSPLLFNVQGARLAMEHDMAMSNANLVCKQEGRLSVKSMDSSNSLEDKKPKDLDFENKRDSYSSDNATPNKTQSLYSKQSPPSGEEASSQQRPSPVMPLPTPIAPFNFPRDEIKRKSPFNFPLNLNNNDIQGNKSLSPLPKDLSKNVKMEEDKTSEYSDVEEDTKKDDVDQPLDLSVTRKPSDKDSEVDNDDRSFRNSVKSYSPPESPAERSKTPENDTTDVDVEGVEPKRDESPPHLVSPPLAFPMPVHPQHSNIIDAMYRPRFPNFHSTESILNSTHSPYVPSPFNFLSPLLGTDGPDRQPSAYAKFQELSAGSGKLRDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCERCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDAYFDDIRSFMGKVTCSPGTRSPAATPPHGTHGPRPSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00441779;
90% Identity
iTF_00050152;
80% Identity
-