Sver005447.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387309.1:2150257-2166534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0051 0.39 11.6 0.1 3 23 139 160 138 160 0.96 2 24 0.13 10 7.1 0.1 2 23 186 208 185 208 0.94 3 24 0.00048 0.036 14.8 1.5 1 23 230 252 230 252 0.98 4 24 0.005 0.38 11.6 0.5 1 23 256 279 256 279 0.98 5 24 0.0091 0.69 10.8 0.6 2 22 285 305 284 305 0.95 6 24 0.0035 0.27 12.1 1.9 1 23 312 335 312 335 0.96 7 24 0.012 0.89 10.4 1.6 1 23 342 364 342 365 0.96 8 24 1.8 1.4e+02 3.5 1.8 2 23 396 418 395 418 0.94 9 24 0.21 16 6.5 0.1 2 20 445 463 444 467 0.85 10 24 0.13 10 7.1 0.0 2 19 490 507 489 509 0.94 11 24 4.5e-06 0.00034 21.2 0.5 1 23 515 538 515 538 0.94 12 24 0.24 18 6.3 0.6 3 20 544 561 543 563 0.92 13 24 0.14 10 7.1 1.8 1 23 570 593 570 593 0.93 14 24 0.00014 0.011 16.5 0.4 1 23 602 625 602 625 0.95 15 24 0.015 1.1 10.1 0.2 1 17 630 646 630 647 0.93 16 24 1.5 1.1e+02 3.8 0.1 3 23 681 702 679 702 0.87 17 24 0.36 27 5.7 1.0 3 23 728 749 726 749 0.94 18 24 2.4e-05 0.0018 18.9 0.4 1 23 797 820 797 820 0.96 19 24 9.4 7.1e+02 1.3 0.4 3 20 827 844 826 845 0.90 20 24 0.047 3.6 8.5 1.3 3 23 855 876 853 876 0.92 21 24 0.0042 0.32 11.8 2.5 1 23 883 906 883 906 0.95 22 24 0.012 0.93 10.4 2.2 1 23 911 933 911 933 0.96 23 24 2.3e-05 0.0018 18.9 0.2 1 20 939 958 939 961 0.94 24 24 2.6e-05 0.0019 18.8 3.1 1 23 967 990 967 990 0.97
Sequence Information
- Coding Sequence
- ATGAATCCAAAAAGTACGGATTGGCGAGCCGGCCCTAATGTTTGTCGTTGTTGCTTGACGGAGGGATGTTATAAAGACATTTCTACCGAGTATTTCTGGATGGGAAAACGCGAGGTGTACGCTGAAATGCTTTCGGACACCCTCAACGTTACAATCGCGTACTCCCAATCAGGAGGTCCAAACAGCAATAGCCGGTTGATCTGCGAGCTGTGTATATCTCGGTTGCGGGATGCCTCGGACTTCAAGCGGCAGGTGCTCGAGTGTGAGAAGACCTTCACTACACACTTGGATCCTACCAGTTCTACGGTTACGGATATTGATGCTGAAAATTACGATGCGACGCGATCAAACGCCGAGACGATTATCAGTAGCACGACCGCTTACCCATTCAGGGTGAATGATAAGTCCATACTCTGCGTCTACTGCCAAGAGCTTTTCGAAGACCCCGAGGAGTTCCGGAGACACATGGACAGTGAACACGATTACTTCAGCCTAAAAGTCGCGTTCCACCATTTGCCGAAAAACGAATTCATAAAAGCGGACCTCACTAATTTGCGGTGTCGTATCTGCAGCCAACAGTTTGAGAATCTCGAAACGGTGTTAGCACATCTTGGTACGGTTCACGACAAAAAGATTGACTCTAATGGAAAGTTAGGTGTGATGCCGTATCTGTTAACTAAGGACGTGTACAACTGTGCGGTCTGCGAGAAGAACTACCCTTCTTTGTTCCATTTAAACAGACACACCATCACACACTTTCTGAGCTATGTCTGCCATGTTTGTGGAAGCAGTTACGTCGCGACCACAGGTCTTCTGAGACACGTTAGATCGAAACATCAAGATTACGAAGTCTCCTGCAAGAAATGTAAGAAAGTATTCCCTTCAATGGAAGCGAAAGAAAAGCATAGGAGAACGCAGAAGTCTTGTATGCCTTACTGCTGTCCTAAATGCCAGGAGAGGTTTCTGGATTGGAAAAACAGGAAGCGACACATGGAGATCGCTCACGGGCACGCGAAGAAGACGTATCGATGCGCAGATTGTAACATAGACTTTACGAACGAAAATGCCTACTATGAACATTTTAGATTGCATCATTCCGAAGACTGTTTTGTCTCGAGACAAAACGCTAAGGTAGTGTTGAGGTACTCTACGGTGTATCCATTCAGGATCCCCGCTAATGACCTGGTGTGTGTGTACTGCTGCGAGCCATACGAAGACCCAAAGAAGTACAGGGACCACATGAAACACGAACACGCACTCTTCAACGTCAATACCGCGTTTGCGCATACCGTCAGCTCTGAAGAATACCTCAAAGTCGATTGCACAGAAATACAGTGCAGACTTTGTCCGAAACGGTTTGACACACTCGCTTCAACCGCCGAACATTTAGTATTCGCACACGACAAGAAAATTAACTTAAACGCAGAAATTGGATTGCAAGTTTTCAAGTTAGGACAAGAGAGATGGGTGTGCGCCCTCTGCCCCCAAAAGTTCCCATCTCTGAGAGCCCTCAGTCGACACAACAGCTGTCACTACCACAAATACACATGCGAGTCATGTGGCAAGTCCTACATTAGTCGCGAGAACTTAAACAAGCACATACTTTTTGGCCATTCACAAGACAAGATATGTGTTAAATGCAGAAAGTCTTTTCCAAATTGCGAAGAACGTAGACAGCACGTTCTAGCTAACAGGCGTTGCTGGCCTTTCTGTTGTAACCTCTGCGGAGACAGATTCGTCTCCAGAAAGCTTAAAACCGCTCATATGACTGAAGTACACAGTATAGGAGGCACGAAGAAGTGCCACACGTGCCCAGAATGCGAAAAGTCTTTTCCTGAATGGAGGTTGTATAGGGCACATTATATCATCACGCACACAGACGTCAACTACGTATGCCCGTTCTGTGGCCTCAAATTCGATAATAAAGGCAGCCTCGaagAGAAGCAAAATGATCCGAATTTCATCGCTAAACGGAACGCCGAGATTATCGTGAAATATTCCACCGTTTACCCCTTCAAGCTGCCTGAAGAGACCATGGTTTGCGTCTACTGTTGCGACAGTTACCCCGACCCTGCTGAATTTAGGGCTCACATGAACGAAGAACATGATACTTTTAACCCCCGAATGGCATTTTTACACTGTTCTGAAGGCTACATCAAAGTTGATTGTACCAACATTAACTGCAGGCTCTGCTTCAAACACTTCCAGAGTTTAGAACAAGTCGCTGAACATTTAAATTCCGAACACAAGAAGCCGTTAGACTTAAACGTCGCGTTAGGGCTTCAGCCGTTTAAATTCGAGAGCAATAAGCTCCTATGCGCAATCTGTAACACCAAATCTATCTGCCTACGTCAGCTGAGTAGACACACACAGAGCCATTTCTGGAGGTTCACTTGCGAGGCGTGTGGCAAATCCTATGCGACCAACACAGCGTTACGAAGTCATATAAGATTCTCTCACATAGGCAATGAAAGAATATGCCGCAAATGTAAATCTACCTTCCCCTCTATAGAGGAGAAGAGGAAACATGTAACTGAAACCCCTAAATGCTGGCCACATCTCTGTTACTACTGCGGCGTGAGGTTTATGACTTGGACCCTCAAGCAGCAACACATGACAGAGGTCCACGGGGTTGAGAAGAAAACACACGTGTGTCCCGAGTGCTCGCTGGTGTTTGAGAACAGGAAAAAGTATCGAACACATTTTAGGTTGTCTCATACCGATGATAACTACGTTTGCTCCTGCTGTGGTATGAAATTTGAAACTAAAAAGAGCTTGGAAGAACACAGAGTGTCTCACACGATGGAGAAACTCTTTCCATGTACAGTGTGTTCTAAAGCCTTTCCTAGAAAGAAGAACCTAGCTCAACACATGTGGATTCATATGGAGCATAAAAGATTCGAGTGCAAACTATGCAATAAAAAGTTTAATCAGAAAGTTAGCTGGAAAACTCATATGAAATCCTATCATCCTGAGTTGGCGGACTTTGAAGGGAAGAATAATAATCTCAAATTGATGTTCTCCGTTTTGAATGATTGA
- Protein Sequence
- MNPKSTDWRAGPNVCRCCLTEGCYKDISTEYFWMGKREVYAEMLSDTLNVTIAYSQSGGPNSNSRLICELCISRLRDASDFKRQVLECEKTFTTHLDPTSSTVTDIDAENYDATRSNAETIISSTTAYPFRVNDKSILCVYCQELFEDPEEFRRHMDSEHDYFSLKVAFHHLPKNEFIKADLTNLRCRICSQQFENLETVLAHLGTVHDKKIDSNGKLGVMPYLLTKDVYNCAVCEKNYPSLFHLNRHTITHFLSYVCHVCGSSYVATTGLLRHVRSKHQDYEVSCKKCKKVFPSMEAKEKHRRTQKSCMPYCCPKCQERFLDWKNRKRHMEIAHGHAKKTYRCADCNIDFTNENAYYEHFRLHHSEDCFVSRQNAKVVLRYSTVYPFRIPANDLVCVYCCEPYEDPKKYRDHMKHEHALFNVNTAFAHTVSSEEYLKVDCTEIQCRLCPKRFDTLASTAEHLVFAHDKKINLNAEIGLQVFKLGQERWVCALCPQKFPSLRALSRHNSCHYHKYTCESCGKSYISRENLNKHILFGHSQDKICVKCRKSFPNCEERRQHVLANRRCWPFCCNLCGDRFVSRKLKTAHMTEVHSIGGTKKCHTCPECEKSFPEWRLYRAHYIITHTDVNYVCPFCGLKFDNKGSLEEKQNDPNFIAKRNAEIIVKYSTVYPFKLPEETMVCVYCCDSYPDPAEFRAHMNEEHDTFNPRMAFLHCSEGYIKVDCTNINCRLCFKHFQSLEQVAEHLNSEHKKPLDLNVALGLQPFKFESNKLLCAICNTKSICLRQLSRHTQSHFWRFTCEACGKSYATNTALRSHIRFSHIGNERICRKCKSTFPSIEEKRKHVTETPKCWPHLCYYCGVRFMTWTLKQQHMTEVHGVEKKTHVCPECSLVFENRKKYRTHFRLSHTDDNYVCSCCGMKFETKKSLEEHRVSHTMEKLFPCTVCSKAFPRKKNLAQHMWIHMEHKRFECKLCNKKFNQKVSWKTHMKSYHPELADFEGKNNNLKLMFSVLND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -