Basic Information

Insect: Shargacucullia verbasci
Gene Symbol: -
Assembly: GCA_947562105.1
Location: OX387294.1:3103961-3109221[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00059 0.044 14.5 3.4 1 23 129 151 129 151 0.96

2 13 1.5e-05 0.0012 19.5 0.7 2 23 157 178 156 178 0.96

3 13 0.028 2.1 9.2 0.2 2 23 183 204 183 204 0.94

4 13 2.2e-06 0.00017 22.1 1.0 2 23 222 243 221 243 0.97

5 13 9.2e-06 0.00069 20.2 2.2 1 23 252 274 252 274 0.97

6 13 6.1e-06 0.00046 20.8 2.1 1 23 280 302 280 302 0.99

7 13 2.7e-05 0.002 18.7 3.4 1 23 308 330 308 330 0.98

8 13 2.4e-08 1.8e-06 28.3 1.1 1 23 336 358 336 358 0.95

9 13 2.4e-06 0.00018 22.1 2.9 1 23 364 386 364 386 0.98

10 13 3.7e-06 0.00028 21.4 0.5 1 23 392 414 392 414 0.98

11 13 0.027 2.1 9.3 6.2 1 23 420 442 420 442 0.97

12 13 1.3e-06 0.0001 22.8 2.1 1 23 448 470 448 470 0.98

13 13 0.00074 0.056 14.2 0.6 1 20 476 495 476 498 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00059	0.044	14.5	3.4	1	23	129	151	129	151	0.96
2	13	1.5e-05	0.0012	19.5	0.7	2	23	157	178	156	178	0.96
3	13	0.028	2.1	9.2	0.2	2	23	183	204	183	204	0.94
4	13	2.2e-06	0.00017	22.1	1.0	2	23	222	243	221	243	0.97
5	13	9.2e-06	0.00069	20.2	2.2	1	23	252	274	252	274	0.97
6	13	6.1e-06	0.00046	20.8	2.1	1	23	280	302	280	302	0.99
7	13	2.7e-05	0.002	18.7	3.4	1	23	308	330	308	330	0.98
8	13	2.4e-08	1.8e-06	28.3	1.1	1	23	336	358	336	358	0.95
9	13	2.4e-06	0.00018	22.1	2.9	1	23	364	386	364	386	0.98
10	13	3.7e-06	0.00028	21.4	0.5	1	23	392	414	392	414	0.98
11	13	0.027	2.1	9.3	6.2	1	23	420	442	420	442	0.97
12	13	1.3e-06	0.0001	22.8	2.1	1	23	448	470	448	470	0.98
13	13	0.00074	0.056	14.2	0.6	1	20	476	495	476	498	0.94

Sequence Information

Coding Sequence: ATGATAGATGTAACAACATCTTGTCGGACATGTATGAAAGACAGTGTGAGTTTGGTCGACCTGTATGAAATAGTAAAAATTGAAGAAAATTGCCTTCAAATAGCTGAGTTGCTTGTGCAGTGTACTCCAACAGAGGTCTCCAAGGAGGATGGATTACCACAACACCTTTGTGATGAATGTGTTAAGGTTCTACAGATTACTTACACATTTCGTAAGCAGGCGGCGAAAGCACAAGAGCAGTTTAAAAAACTTTTACAGAGTAGTGTAAAAGCAGAACCACAAGAAATTGACCTTAAAACTGAACATGATGATGAATATTTTGAAACTTATGATGACTTCAAATTGAACACCAATCTTTCAAAAACTGAACTTGAAGATAAAGATTATACTTGTACCAAGTGCAATAAACAGTTTACAAAAGAGAAGAAATTTTTAAAACATTTAGAAGCACATAATAACCTTCCTTTACAGTGTAGTATTTGTAAAAAGTCATATCAAAATCAGGCATCTTTAGAAAAGCATTTAGCTAAGCATGATAAGACTAATACATGTATGATTTGCAACCAAAAGTTTGAAAGTGATACACTTTTATTGGAACACATGGTAGAACACTCTGGTGATATTCAAGTTAAAACTGAAAATGAAAACCATGAACAAAGGTTACAATGTTCAGATTGTGGTTTAACATTTACAAAGCAAAGAGGACTGTCAATGCATATGAGAAAACATAGAAATAAAAACGAGAAGACACAGTATATTTGCGATACATGTGGAAAGAATTTTACGATGAAACATTTGTTGAAAAGGCATTTGGTGATGCACAGCGAAGTTAAACCATACAAGTGTGCGAAATGTTCTAAAACATATGCTCGACGGGACCAACTCAGTTCTCATATGTACACACACAAGGAAAATAAGCCTTACGTTTGTTCATACTGTAAGAAAAGTTTTGCCCAGATGTGTAGCCTCAAGGACCATGTCCGCAGTCACACAGGAGAGACTCCATTCTTATGTTCAGAGTGTGGCAAGGGCTTCACCAACAACTCTAATCTGAGACAGCATATGATGAGGCATTCTGGAATCAAGCCATATGCATGTAATATGTGTCCTAAGACATTCTGTACGAAAGGCCAGATGACATCGCACATGTCGACGCACACGGGCGAGCACCCATACAAGTGCGAGGAGTGTGGCGCCGCGTTCACCAAGCAGAACTCCTTGAAGAAACACTCCATGATACATCTGGGCGTGAGGCCGTTTGCCTGCGACACTTGTAGCATGAGGTTTACATGCAAGGACCATTTGAAGCGTCACAACAGGATCCACACCGGTGAAAAACCGTACAAGTGCAAATATTGTGAGCGAGCGTTCTCTCAGAGCAACGATCTAGTGAAGCACACGCGCCAGCACATCGGGCAGAACATATACCAGTGCACTATCTGCAGCTTGCGCTTCAGACTGCTGTCGGAACTAAAGCAGCACTATCCCGTCCACTTCATTAACAGCACGGATGGGGCCATCGACCCCAGTGTTACCAAAGAACAACCGACAGAAATCAAGGAACCTCTCAACAAAGAGGATCCTTCCAAAGACCAACCTCTTTTCACTATTAAGTCTTCGCCAGAATTCAACCTCCTATCCTTCAAAAATGAAAAGGACCTCATTCTTAAACCTCCTGCGGTTGGTAAGGACCTCCCTATTTTGACTCTGAAGCCATCTCCGGCTGATAGCTTCGAGTCGTTGTCAGAGCGAAAAGAACCTAATGTCAATGAGAATAGAATCGTTATAACTATTAACAGATGTGATGCGAATGGTGTTGTTAACGGTATTACTATTAATATGCCGCCTAAAGAAAGCTAG
Protein Sequence: MIDVTTSCRTCMKDSVSLVDLYEIVKIEENCLQIAELLVQCTPTEVSKEDGLPQHLCDECVKVLQITYTFRKQAAKAQEQFKKLLQSSVKAEPQEIDLKTEHDDEYFETYDDFKLNTNLSKTELEDKDYTCTKCNKQFTKEKKFLKHLEAHNNLPLQCSICKKSYQNQASLEKHLAKHDKTNTCMICNQKFESDTLLLEHMVEHSGDIQVKTENENHEQRLQCSDCGLTFTKQRGLSMHMRKHRNKNEKTQYICDTCGKNFTMKHLLKRHLVMHSEVKPYKCAKCSKTYARRDQLSSHMYTHKENKPYVCSYCKKSFAQMCSLKDHVRSHTGETPFLCSECGKGFTNNSNLRQHMMRHSGIKPYACNMCPKTFCTKGQMTSHMSTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLGVRPFACDTCSMRFTCKDHLKRHNRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICSLRFRLLSELKQHYPVHFINSTDGAIDPSVTKEQPTEIKEPLNKEDPSKDQPLFTIKSSPEFNLLSFKNEKDLILKPPAVGKDLPILTLKPSPADSFESLSERKEPNVNENRIVITINRCDANGVVNGITINMPPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00072253;
90% Identity: -
80% Identity: -