Sver012376.1
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387310.1:1122477-1124819[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.4e-06 0.00026 21.5 4.2 1 23 8 31 8 31 0.95 2 20 0.00016 0.012 16.3 0.3 2 23 37 59 36 59 0.94 3 20 2.5e-05 0.0019 18.8 0.3 2 23 68 90 68 90 0.97 4 20 9.7e-07 7.3e-05 23.3 2.0 2 23 99 121 98 121 0.95 5 20 1.3e-05 0.00098 19.7 2.5 2 23 129 151 129 151 0.96 6 20 4.1e-06 0.00031 21.3 2.4 2 23 160 182 159 182 0.96 7 20 5.8e-07 4.4e-05 24.0 1.1 1 23 188 211 188 211 0.98 8 20 0.00039 0.029 15.1 0.5 1 23 254 277 254 277 0.97 9 20 8.1e-06 0.00061 20.4 1.1 1 23 303 326 303 326 0.97 10 20 0.48 37 5.3 0.8 2 21 334 353 333 354 0.93 11 20 0.015 1.1 10.1 2.2 2 23 363 385 363 385 0.95 12 20 0.0024 0.18 12.6 5.5 1 23 407 430 407 430 0.97 13 20 7.4e-06 0.00056 20.5 0.5 2 23 437 459 436 459 0.96 14 20 3.1e-05 0.0023 18.5 2.1 2 23 466 488 465 488 0.94 15 20 0.0061 0.46 11.3 2.2 1 23 494 517 494 517 0.97 16 20 0.16 12 6.9 7.1 2 23 525 547 525 547 0.95 17 20 3.6e-05 0.0027 18.3 0.6 1 23 554 577 554 577 0.97 18 20 0.02 1.5 9.7 1.9 1 23 584 607 584 607 0.90 19 20 0.031 2.4 9.1 2.8 5 23 624 643 621 643 0.90 20 20 2.5 1.9e+02 3.1 0.4 1 12 693 704 693 707 0.85
Sequence Information
- Coding Sequence
- ATGTATCAAAACCAACTTGATTTCGTTTGCGATTACTGCTCGAGAACTTTCACAAGGAAATATAATCTACAAACACATATAGAAAACTGTCACATCAACTCGTCATGTAACTGCAATATTTGTGGGCAAAGCTTCGGCAGCCCCGCCGGCTTGCAGCTCCATTTGACAAGAGGACACAACAACTACAATCAGCCATACCCGGAGTGCGAGTTATGCGGTCGCATTTTCACGAGAAAGCAAAATATAATGTCTCATATGATCACAGTACATTTACAAGGCTTAGGCTATGAGATAAAATGTAGGCTGTGTGACAAAACCTTCACCACAGAACGGAATCTGAAACGTCACATGAATCAGTTGCATAACCCTGATGTAGAATACCCCACGTGTAATGATTGCCACAAAGTGTTTAAAGGGAAACACTCGTTAATCGCTCATATTCAATCGGTGCATAATGTTAGCGAGAAAGATGCCATCAAGTGCCACCTCTGTGAGAAAGTTTACACGAATAACAGGAACCTGAAACGACATATTGAAATGTTTCACGGAGAAAAAGGGGAGTTTAGATGCGATATTTGTCCAAAAGTGTACACTTCCAACCAGAGTTTGAGACGCCACGCCAGAACGAGACACAGTACCGACAACCAGGAACACTTGACGTGCAGTTTTTGTATGAAACTTATCATCGGGAGGGAGAATTTCGATAGCCACATACAATTTCATCACCAAGACATCGAAATTGATACAAAAAATGCCGAATTTGTTTGTGGTTCTTGCGATAAGAGTTACGAGGAAGAACCGCATTTACGCCAACACATTAAATCTGAGCATTCGTTCAAAACTTTTTATAAGTATTGCAAGAAATCGTTGCATAAACAGTACGGTGTCGATTTAATGGAGAATAACTACAATTGCGAATTCTGTGGCCATTCATTTCCGACCGTTTACGAACTGAAAGACCACATGAGAGTAAACCACGACACAGAGTACTCGCTCTCTACATGCAATGTGTGTTTCAACAAGTTTTTCAGTAAAGAAACTATGTCGGCACACAGAAAAGTTTGCTTACCACCCCCAAACGTGAATTCTTGCAGCCATTGCGACAAATTATTCACGGATATTTCTAGTTTAGAATTTCACACTAGAATATTCCATCCGCAAGCTCAAATTGCAGACTCAAACATATCTTCGACGAACATCGATGAGGAAACAGTCTCGTTTAAATGCGAGCATTGCGACAGAATTTACTATAGCGACCGCTCGCTCAAACATCACATAAAGCTAAAACATACGACAGACGAAGAAGTAGAGTGCGAATATTGCGGGAAAATCTGCAGTAACAAGTATTATCTGGCGTCACACATAAAGATCGTTCATAACAACGATTCTTGGTCTCGCTGCGAATACTGTGATAAACAGTTCAAATCCAAAAGAAATATACGACGCCACATAGAGTACACTCATTTGGGCATGCAGCGATACAAGTGCATAGAATGTGAGACACTGTTTAAAGAAAAAAGGAGTCTGAGGAAGCACGTCAGGACTAAACATCCGAATTCGGCGTCTTTCCCTCAATGCCATATATGTCACAAGCGATTCGAATCCGCGAAATCCTGTAAAATACATCTTAAATTACTCCATTCTTTTAACATGAACACCTATCCTTGTCATTTGTGTTCCGTCTCGTTCAGCTCGAATGAAGCTCTCACAATACATTTGGAGACGAAGCATTTAGCTGAAGACGAAATCTACAAGTGTGAAGAGTGTAATTTGGTCTTCAAAGGCCAGGAGAAGTTCGACAGTCACAATGAAGTTTGTCATGTTAATTTAGTTCCGAGTATCAAGCAGAAAGTTCTGCCCAGATGCATACTCTGTATGAAAGACTTCAGCACTAGAAAAACGTTGAAAAGACACATTAAAAAGTTCCACGATGAATTTGATGTTGATGAACTGGCGACTTTCGGTTCAAGGAGAAGGAACTTTACAGTTGATTGCGAAGATTGCATCAAGAATTTTAACGCTGACTTTCATTTTAACGTCTATAACAAGTTAAAACATCTTCGGGACTCGGTCGTTTTTAAGTGCGAAACTTGTGGGGGGTCTTATAACTCCCTAGAGTACGCTATACAGAGATATAGAGTTATAAACGTTGACTCGTACAAAAGTAAAATGATTTTAAGTGAGCTTTGTACTACAGAAATGAGTGAAGAAGAGACAGATTTCTCTGGATTCGGGGCTTTGCACGATATGTTGCCTGAAAGTACGACTGGTGATATCAAAATGGAACCGCCCGATGAAATTATGGCTGAGAATTATATTAAAACTGAACCTGCTTCGCCATAA
- Protein Sequence
- MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCNCNICGQSFGSPAGLQLHLTRGHNNYNQPYPECELCGRIFTRKQNIMSHMITVHLQGLGYEIKCRLCDKTFTTERNLKRHMNQLHNPDVEYPTCNDCHKVFKGKHSLIAHIQSVHNVSEKDAIKCHLCEKVYTNNRNLKRHIEMFHGEKGEFRCDICPKVYTSNQSLRRHARTRHSTDNQEHLTCSFCMKLIIGRENFDSHIQFHHQDIEIDTKNAEFVCGSCDKSYEEEPHLRQHIKSEHSFKTFYKYCKKSLHKQYGVDLMENNYNCEFCGHSFPTVYELKDHMRVNHDTEYSLSTCNVCFNKFFSKETMSAHRKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIDEETVSFKCEHCDRIYYSDRSLKHHIKLKHTTDEEVECEYCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLETKHLAEDEIYKCEECNLVFKGQEKFDSHNEVCHVNLVPSIKQKVLPRCILCMKDFSTRKTLKRHIKKFHDEFDVDELATFGSRRRNFTVDCEDCIKNFNADFHFNVYNKLKHLRDSVVFKCETCGGSYNSLEYAIQRYRVINVDSYKSKMILSELCTTEMSEEETDFSGFGALHDMLPESTTGDIKMEPPDEIMAENYIKTEPASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00072251;
- 80% Identity
- -