Sver013724.2
Basic Information
- Insect
- Shargacucullia verbasci
- Gene Symbol
- -
- Assembly
- GCA_947562105.1
- Location
- OX387291.1:11718701-11726660[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 9.8e-07 28.7 0.1 10 39 2 31 1 36 0.93
Sequence Information
- Coding Sequence
- ATGGAAGCGGTTCAACGACAGCAGTTGTCAATGCACGCTGCGGCAAGACGCCATGGCATTCCTAGACGAACGCTACGGAACCACATGAAGACTGGCAGCATCGTAAAACCCTCATTTATAGAGACAACGAGAGGGGCGAAGTTACTGCAGTATGAAGGCTATACATACTGGCGGGGTACTCGGTCCAACTACTGCGAAATCTGGTACTGCTCCTCCAAAGCGAATGGGTGTCGCGCCTCTGTCAAATACAACGGCCAACAAATGACAATCGTGGAATCCTCGCACAATCATCTCAGACCTATCATGATCAAGAATAATGATGGTGAAACATTACCGGAATGGACATCAATATATTTTGTAAAAGTTACAGAACATGAAATGAAATGCAACTTATGTGACATTATTCTAAAAGTGGATGAAAAATCTTTAGAACTTTTAGAACATTTGAAAGTTGAACACAAAGATATATATGACCTACACAAGGACAACCCGGAGGCTACAGTCGGGTTTCGTATAGAGTTCCTGCATTTAAACATGTTGAAGGATGACGGAGACCCTAAAACACAGCCTGTCTTACTGGGAGAGGTGTGTGAGACTACAACTGAGCCTATTGTGGAGAAGGTAGAAGATACAGTAATAAAACCTGATGGAACCAATTTGCATTATGTGGTCCTTGAAGGAAAAAAGAAACGGAGGGAGAGTTCCGGACCACGTAAACGCAGTTGGGTGTGGAAGTACTTTGAAAAGCTGAGTAACATTATCTACCGTTGCCGGTTGTGCAATGTGGTGCTATCCATCAAAGGTTGCAACTCCAACAACATGAACCGTCATGTCAGGTCAAGGCATCCAACGGTATTCAAGAGTGAGGTCACGAAGAGAGAGAGAGCCGATGATGTCCATATGATCACAAGTGAATCAGACACACCATTTGCTATTAAGACAGAGGAAATTTATGCTAGTGATCGGGATTATGAGGAAGTAACAGACAGTCCATCCCAGAAACTTCGGCGCAGCTGGATCTGGTCGTACTTTGACCGCGTGTCGAGCACGCAGGCGCAGTGCAAGCTCTGCAAGCGTCACATCTGTCATGGAGGCAACGCTACGGGCAATATGAACCGACATCTTAAGATGATACATCACAAGACTGCCTGTACATATGACCAAAGCTGGGTGTGGAAAGTGTTCGAGGGGAGCGACGCTGACTACTACAGCTGCAAGATATGCCAGTACAAGTGTCTCAAGTGCAGCGACATCGACAAGAGCATGACCAGCATCCTGAACCACCTCAAACTGGAACACGGGGTGGTGTCAGGCGACCAGATCATCACTGGCACTGATATAGAGGGAGAAGAAAACTGCTAA
- Protein Sequence
- MEAVQRQQLSMHAAARRHGIPRRTLRNHMKTGSIVKPSFIETTRGAKLLQYEGYTYWRGTRSNYCEIWYCSSKANGCRASVKYNGQQMTIVESSHNHLRPIMIKNNDGETLPEWTSIYFVKVTEHEMKCNLCDIILKVDEKSLELLEHLKVEHKDIYDLHKDNPEATVGFRIEFLHLNMLKDDGDPKTQPVLLGEVCETTTEPIVEKVEDTVIKPDGTNLHYVVLEGKKKRRESSGPRKRSWVWKYFEKLSNIIYRCRLCNVVLSIKGCNSNNMNRHVRSRHPTVFKSEVTKRERADDVHMITSESDTPFAIKTEEIYASDRDYEEVTDSPSQKLRRSWIWSYFDRVSSTQAQCKLCKRHICHGGNATGNMNRHLKMIHHKTACTYDQSWVWKVFEGSDADYYSCKICQYKCLKCSDIDKSMTSILNHLKLEHGVVSGDQIITGTDIEGEENC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01342387;
- 90% Identity
- iTF_01342387;
- 80% Identity
- iTF_01342387;