Basic Information

Gene Symbol
stc
Assembly
GCA_943735985.1
Location
CALSEZ010000199.1:738500-752183[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 2 2.4e+04 -4.3 1.6 15 19 507 511 506 511 0.81
2 13 0.15 1.7e+03 -0.5 0.7 4 10 541 547 540 547 0.92
3 13 6.5e-06 0.076 13.4 15.9 4 19 555 570 553 570 0.93
4 13 4e-08 0.00047 20.5 14.7 1 19 606 624 606 624 0.97
5 13 9.1e-05 1.1 9.8 12.7 1 19 665 683 665 683 0.97
6 13 7.3e-07 0.0085 16.5 12.0 1 18 724 745 724 746 0.87
7 13 1.3 1.6e+04 -3.5 2.2 5 10 775 780 775 780 0.93
8 13 0.002 23 5.5 7.3 1 11 786 796 786 797 0.95
9 13 0.03 3.5e+02 1.7 0.3 3 10 800 807 799 807 0.92
10 13 3.8e-06 0.044 14.2 14.0 3 19 815 831 813 831 0.92
11 13 0.0099 1.2e+02 3.3 15.6 1 18 870 886 870 887 0.90
12 13 3.1e-08 0.00037 20.8 13.6 1 17 923 941 923 947 0.84
13 13 0.0001 1.2 9.6 6.5 1 14 953 965 953 965 0.96

Sequence Information

Coding Sequence
ATGTCGCAGTGGAACAACGCTTACGCTTACAATAACCAATACCAGCCAAACAGTTGGAACAGTGATTTGAATGGTCAGTACATAAATCAGCCATATTATCCCAATCGACAATATAACGCCAATAATCAGTACGTTAGTTTTGACGAGTTTCTAACACAGATGCAGAGTAATGGACCAGCTACAGGAAATGCCTCCAATTATGGCAATGTTCAATTCCAAAACTATCCTGTGAATCAGTACAATTTTCAAAACTTACCCTCTACTTCACAAACACAATTAGATTCATTTAACTATGGACCAAATTCACATATTCCTACTGACGCAGAATCTTATCAAGGACAGAATCCATTTAATACATCATCTGCTTCTTTCACAAGTGATATAGTAATGAAATCTAACCTCACTCCGACTGCTACAGAATTTGTACCGAAGTGTTCTATGGTTATTCCATCTACAAGTACACAAAATGTTAGTCTTCCAGAGTCTATTGCTGATAATAGATTACAAGAGTCTACTACATTAAATGAATATAAGACTGTACAAAGTAAGTCTTCAGAAACAAATTGGAGAGAGAGACCACAAACTCAACAGAGCAGTAGTCAAAATGAAACTCCAAACAAATATGAAAGTGAAAATACCTACAATCGTAATAGTTATAATAATCAAGATGCTTATAACAATTGGGGGTCTAGCAACCAAGATGTCAATAACCAGGATTATAATAACTGGAATTCCGATGACTACACCCAGAATCCTTCAAACTCCAGCAATCCTAATATCAGAGAAAGTTACATTAAAGACAATAACAGTGATAAACAAGTTTCCAGCAAAAACTATCAGGAGTCTACTAGGCACAACCAGGAATCTAATAGTCGAAACAAATACAATGACTATGACTATAACCAAGGCTCTAGTAGTCAGTCTAGTACTGGAAACAGTGAGAATAGGGAGAGAGACAGATATAAGAACACAAACAATCAAAACAGGATTTACAACAGAAACTCTGCTCACTGGGATCCTGATAGTTATAACCAAGAGTCTAGCAATAATCAATCCAACAATCGTTATGATAGGAACCATTCAAAAACCAACTCAAAATCTAAGAATAAGGATTCTGAACGCACATTCTACAATAGTTCTATAAATAAAAGCCAAGATGTTAGAAATGGGAAAGGAGAAGGCACAAGTCGAAGGAATATTACTGGAAGTTTGAGGGTTAGAGGTACAGAAAGGAATAGTGCTGAAGATGAGCAATATGGTGAAGAGAAATCTAAGGTAGATCATACATCCAGTCCAATTAAAGGAAGAAATAACCATAAAGAAGTATCAATCACAGAATTGACTCAACGGGATCGGCTAAGTGAACAACTGGACAAAGGCACTTTAGAATGTCTTGTGTGCTGTGAGCGCGTCAAACAAACTGACTCTGTATGGTCCTGTAGCAACTGCTACCATGTGCTGCATCTCAGATGTATAAAGAAATGGGCCTTAACCAGCATTGTTGAAAGCAAATGGCGTTGCCCAGCCTGCCAGAACATAAGCGGGGAGATACCAACGGAATACAGATGTATGTGTGGAACAATTCGCTCACCTGAGTATCAACGTGGCTACATCATCGCCCACACTTGTGGCAAGTCTTGTAAAAGGCCTCGAAGTTGTCTGCATCCTTGCACACTACTTTGCCATCCTGGACCTTGTCCTCCGTGCCAAGCCACCATCAACAAGGAATGTGGCTGTGGTAAAGAGAAGCGGTCTATATTGTGCAGCAGTAAACTTCCCCAAGTGTGTGGAAGGACGTGTGAGCGCACGCTCGAATGTGGCGTTCACAAGTGTGCGAAGGAATGTCACGAGGGACCGTGCGGGTCCTGCACTGAAACTGTCACCCAAGTATGCTACTGTCCCCTGGCTAAGAGCCGTTCGGTGTCGTGCACGCGCGAGACGGACTCGTGCACGCAGTGGTCATGCGAAGCGGCGTGCTCGCGCGTGCTAGCGTGCGGCGCGCACGTGTGCCCGCGCACCTGCCACGTGCCGCCCTGCGAGTCCTGCCGCTTGTTGCCCGACGCCGTGCGAACTTGCCCTTGTGGCAAAACCAAGATACAGAAAGATCAACGCAAGGCTTGTACTGACCCAATACCTCTATGTGAGAATATTTGTGCTCAGCTGTTTACTTGTGGGCCAGTGGGAGATCGTCACTTCTGCAAACAGAACTGCCATGTTGGTCCATGCCCCCCTTGCCTGGAGAAAACTGTGTTGCAATGCCGCTGCGGACACTCCAGCCGCGAGGTACCCTGCGTAGATCTTCCAGAGATGGCCAACAACATACGATGCCAAAAGAAATGTAATAAGAAATTGTCGTGCGGGCGGCACCGCTGCCGCGCCACGTGTTGCGCGACGAGCATGCACCGCTGTGCGGTCGTGTGCGGGCGCACGCTCTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGCCACACAGGACACTGTGCGCCTTGCCCGCGTGTCAGTTTCCAAGAGCTGGCGTGCGCTTGCGGCGCGGAAGTGCTAATGCCACCGGTACGGTGCGGCGCGCGGCCGCCAGTGTGCACGGGGCCGTGCCTTCGCACGCGCACGTGCGGCCACAGCCCGCACCACGCGTGCCACGCCGGCGACTGCCCGCCCTGCGTCGTGCTGACCACCAAGAGCTGCTATGGGCAACACGAGGAGCGCAAGACCATCCCATGTTCGCAAAAGGAGTTTTCGTGCGGCCTGCCCTGCGGAAAGCCGCTGCCTTGCGGCAAGCACACCTGCATCAAGACTTGCCACAAAGGACCCTGTGACACTGCCAAATGCACACAGCCATGTAACGAGAAACGTCCCAGCTGCGGTCATCCGTGCGCGGCGCCCTGCCACAGCGGCAACAACTCATCCAGCTATGGCACTGGGTCCCGTGCCGCCACCGGGCGCAGTAGCCAGTGCCCCAGCAGCACGCCGTGCCGCCGCCTCGTGCGCGCCACCTGCCAGTGCGCTCGCAAGTACACCGACCGACCCTGCAACGAGAATGCACGAGACTACGCTAAGATGATGAGTGCGCTAGCGGCCACGAAAATTCAAGATGGTGAATCGGTGGACTTGTCTGAGGTGCAGCGCCCTGGAGCTATGCTCAAAACTTTGGAATGCGATGACGAGTGTCGCATGGAGGCGCGCACGCGGCAACTGGCGCTCGCGCTACAGATTCGCAACCCGGACGTGTCGGCCAAGCTTGCGCCGCGGTACAGCGAACACGTGCGCGCCACCGCCGCGAGAGAGCCCGCCTTCGCGCACCAGGTACACGACCGGCTCACCGAACTCGTGCAACTTGCCAAGAAGTCTAAACAGAAGACCCGTTCCCACTCGTTCCCGTCAATGAACCGACAGAAGCGTCAATTCATCCATGAGCTGTGCGAACACTTCGGCTGCGAAAGCGTGGCGTACGATGCGGAGCCCAACAGGAACGTCGTCGCCACCGCCGACAAGGAGAAGTCGTGGCTGCCGGCAATGAGCGTGTTAGAAGTACTGGCGCGTGAGGCCGGCAAGCGGCGCGTGCCCGGTCCGGTGATACGTGCGCCGCTCAATACTGCCCCCAAGTCAACGGGTGGGTGGGCGACTCTGACGTCAACCAACGCGTGGGCGGCGCGCAGTCAACCCAAACCAGCGCACGACAAACCCAAGATAGACTATTTCGACAACCCGCCCGATAACTAG
Protein Sequence
MSQWNNAYAYNNQYQPNSWNSDLNGQYINQPYYPNRQYNANNQYVSFDEFLTQMQSNGPATGNASNYGNVQFQNYPVNQYNFQNLPSTSQTQLDSFNYGPNSHIPTDAESYQGQNPFNTSSASFTSDIVMKSNLTPTATEFVPKCSMVIPSTSTQNVSLPESIADNRLQESTTLNEYKTVQSKSSETNWRERPQTQQSSSQNETPNKYESENTYNRNSYNNQDAYNNWGSSNQDVNNQDYNNWNSDDYTQNPSNSSNPNIRESYIKDNNSDKQVSSKNYQESTRHNQESNSRNKYNDYDYNQGSSSQSSTGNSENRERDRYKNTNNQNRIYNRNSAHWDPDSYNQESSNNQSNNRYDRNHSKTNSKSKNKDSERTFYNSSINKSQDVRNGKGEGTSRRNITGSLRVRGTERNSAEDEQYGEEKSKVDHTSSPIKGRNNHKEVSITELTQRDRLSEQLDKGTLECLVCCERVKQTDSVWSCSNCYHVLHLRCIKKWALTSIVESKWRCPACQNISGEIPTEYRCMCGTIRSPEYQRGYIIAHTCGKSCKRPRSCLHPCTLLCHPGPCPPCQATINKECGCGKEKRSILCSSKLPQVCGRTCERTLECGVHKCAKECHEGPCGSCTETVTQVCYCPLAKSRSVSCTRETDSCTQWSCEAACSRVLACGAHVCPRTCHVPPCESCRLLPDAVRTCPCGKTKIQKDQRKACTDPIPLCENICAQLFTCGPVGDRHFCKQNCHVGPCPPCLEKTVLQCRCGHSSREVPCVDLPEMANNIRCQKKCNKKLSCGRHRCRATCCATSMHRCAVVCGRTLSCQLHRCEEFCHTGHCAPCPRVSFQELACACGAEVLMPPVRCGARPPVCTGPCLRTRTCGHSPHHACHAGDCPPCVVLTTKSCYGQHEERKTIPCSQKEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTAKCTQPCNEKRPSCGHPCAAPCHSGNNSSSYGTGSRAATGRSSQCPSSTPCRRLVRATCQCARKYTDRPCNENARDYAKMMSALAATKIQDGESVDLSEVQRPGAMLKTLECDDECRMEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPAFAHQVHDRLTELVQLAKKSKQKTRSHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVIRAPLNTAPKSTGGWATLTSTNAWAARSQPKPAHDKPKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-