Sbem020647.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010001193.1:119644-136815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00079 0.054 14.3 1.1 1 21 244 264 244 265 0.95 2 9 0.46 32 5.6 0.3 2 20 333 351 332 353 0.84 3 9 0.015 1 10.3 1.2 3 23 797 817 796 817 0.97 4 9 0.052 3.6 8.6 0.7 1 23 955 977 955 977 0.98 5 9 4.1e-07 2.8e-05 24.7 2.6 1 23 983 1005 983 1005 0.99 6 9 0.00055 0.038 14.8 0.3 1 23 1010 1032 1010 1032 0.98 7 9 0.0017 0.12 13.3 2.4 3 23 1040 1061 1039 1061 0.96 8 9 0.1 7.1 7.7 2.3 1 20 1068 1087 1068 1091 0.92 9 9 0.00028 0.019 15.8 1.2 3 23 1100 1121 1099 1121 0.96
Sequence Information
- Coding Sequence
- ATGGCTGAAATTACCAAAAAGAGGAGTAGAAAGGATATATTAGTGCCACGAACTGAGGTTGACATTGAAGATTATGATTATGCCGAAATTCTACGTTTGCAGAATTCAGTGCAAGAGGTGAGCAGTTTAATGAAACAAGCAACTTCGAATAACTCGAAACAAAGTTCGAACATACAATTTGCTGTTGATGTAATGGTTGAAGAACTGAATGAAGATGACACCTTGAATAACTCCAAAGATGCAGTAGCCAGAGCCGCATACAAATTCGAAGCAAAACAAGTGGTAATTAACAAGCACAAAATGTGGGTGGAACTTGATAGAATATCAAAAACAATCTTAAGTTACACTGATAAGAAACTCGCCATTGAAGTTAGAAATTCCTGGGGACGACTGGAGAAGCAACAGATTGAACAAAGTCCTAAAGAAACTCTGCTGCAGGTTGCAATAGTCAAATGGACGACTTGGGTAATTTCTGAAAAAGCAAAGAAAGGACAAAGAGGACTACCTTTATCATACAAATGCTATGCATGCAATAAGGCTTGGTGGCGTCTTATGCCTTTCAGAGATCATATCGAGCAGCACCCCGAAGATCACTTAGATGTTGATATAGAAACAGGCTTGTACGAATGTAATATCATTGCTTTTTTCGGCGATGATCGGGATAAACGCTTTATAAATATCCAAGGTCCATGTCCGAAGTGCTTAAATGGAGTACAACAGCATGAGTTCTACAAATGCAGTGATTGCCCACTCGTTTTCGCAACATGTACAACTCTTTATAAGCATAGAATGGAATGTGGTAGGAACACTACTTTCAGCATATCTTGCAGCATATGCAACTACAAATGCTGTGAAAATGATTATAAGGCTCATCTATCCACTCATACAGTGCCCTCTGACGAACCAATGGATAGTATAGTGAAAATACATAGTGATTGTGGTTCCAAATATATAATTTATAATTTACATCCATGCTTGTTAAAATCCAGGAATGTATATTGTGATTACTGTCCGAGGAAGTTCCACAGTCAATTGTTTGCCAAACTTCATATGGAAATTGCTGATTCAGATGTCACTTGCCAGGTTTGCAGGGAGCTCTTACCAAGAGCGTGTATGGAAGTAGAACATTTAGCAGCTCACAGTAAGGACTTTTGTATGGTGTACAAGTGCTCATTATGCCCCATGCCAGTGGTGTTCCCCGATGATGTATCAGCCAAATACCACATGTTGGCCTGGCATGACAAGATAGAAACAAGAAATAGGACTTATAACGATATGGTAATTGTGCCAAAAAAAATAGTAGCTCTGTGGCAAAACATAGATCCAATGGACCCAAATACCCTTCACACAGAAGATTTCCAAAAAGAAACAGACGAAGCAGTTCTCAGTTTAAAAAATCTCAATTATATGAATGAGGCAGACAATGTAAACAATTCTAGTGTAGATGCCAATACTAACGGAAATAATCACGACACGCGGACCGACAAAATAATGATCAGTATAAGTGATATTAAGACGGAAGATACAGACTTTAATGAAACAGTTGAAGACTCTCAAATAGACTTTAATGAAACAGTTGAAGTCTCCGAAATGGAATTAAATGAATCTGTTGTAGACTCCCAAACTGACTTTAATGAAACTGTTGAAAATTCCAAAATAGACTTTGATGTAACAAAAGAAGAGCCAAAACTTGAAGTAGATTTAAGCATAGTGAAGACGGAGAAAGACTACGATTTTGACATACAGATAGACGGACAGGCGTGTTCTGCAGAGGAATTCGAAATTAAGAAAGAAATGGTCGATTGTGATGAGCTTTTATCAAACATTTACCGCCAGTCGAACGCACACAACAAATTTAACTCGCATAACGAATTTAAGGCGTGTAATGAATCTAACGCCCATATAGACGAAGACTTCATTAAACAAAGTACTTTTACAATCAGTCAACGGAATACCACAGTTAAACAAGAAATTAAACTAGATTCAGATGATTTTGACGAAGATGATTTAATAATACTTAGACCCCCAGAGAGCATTTTTGGCGAAGAAAATATATATGGAGAAATACAAGAACGAAAGCCTGAAATAAATATGTTTGATTTGGAACCAGTGGTGCCCTTAACATCTCGTAAGAAAAAAAAGATATACAATTGTAATAAATGTAAATTTAATGGACATCATAAACAGTATAAAAAGCATATACTAGAAGTACACAATCGCAAAAGGACAATAAAACTAATGGTTACTGATTCTCTCAAAGGTAAAAAAGAAGCACTACGTAACTCTCAAATAATGGAACCATGTTATTCATGTACAAAATGCAACTTGGAATATACCTTTCACAGGTACATAAAACACTTCACGGTCCACGGGTTACCGGAGAACTGTTGTCCAAAATGCAATGTGATTTACCCGGAGCACTCAACTTTGGCCGCTCACATCCGCTTTCATATACACAGTTCATTTATATCTGTGAGGATCATCGAAGAAACCCGAGAGGTCTCTAATATAAAAATGTATCAGTGTATCAAGTGCAGGGGCAAAGTTCAGAAACAACATATGTTTGCACATTGGGAGACCCATTTGGACATTGGGAAAGAGGAATCGTGGGAAATAGTTGAGGAAAATGCAAAGGATGTTGGGGAGTTGGAGAATGTTGACTCCGCACTGCCAGTGGAGAAATTGAAGAAGGTTATAGACCATGTCCTAAGAAATGGTTCTGACCGTGGAAAAAGGGTAAAGCCTACGGAAAGGTGTTGTGTAGTGTGTTTAAGGTCATTTGACCGTCATAACGACTGCAAAAGGCACCTTGTTCAACATTTGCTGACCGATGCGTACGCACACCGTGGAAAATACGATGCTTTTAAATGTCAAATATGCGGAGATATGCTTGAGAAAATTGACAAGTTCAGACAACACATGCGCGATCACGCGTGTCTGCCCATTTACAAGTGCGAGCTGTGCGATAAAATGTTTAGCGACTCGAGTAACTTCACGAAGCATAAGAAGGTCCACAATCTGCAGATGTACACGTGCGATCTTTGCGGGAAGAAGTTCCAGGCCAAAGTGTCCATTGAGAATCATATGCTATCTCACAACAAATCGCCGCCCGTGGACTGTGAGTTTTGTGGAAAGCACTTCAGTTGGCAGTCCGACTACAAACGGCATCGTAGGCTAATTCACTTGAAGTCACGCACAACATTCTCGTGCCCGATTTGCAGGAAGAAATTTGAAAATTGCAGGACGAAATGGGACCACATGTGGTATGTTCACAAAGCTAGGAACCGGAAGGCTGATTGCCTCATATGCGGCAAAGGTTTTAGAAAACTCACCGACCTAAATAACCACACGAAAAAATTTCATACCGTTATTGACAAAGTTCCGCCGTGTCTGATCGGAAAGGAGCAGAAACCTAAGAATTACGACAAAAATGGGGTCAACTTTAAGTATGTTAGAAGAAAGGGGGACGAAGTTTTAGTGGTTATTGACGGGTAG
- Protein Sequence
- MAEITKKRSRKDILVPRTEVDIEDYDYAEILRLQNSVQEVSSLMKQATSNNSKQSSNIQFAVDVMVEELNEDDTLNNSKDAVARAAYKFEAKQVVINKHKMWVELDRISKTILSYTDKKLAIEVRNSWGRLEKQQIEQSPKETLLQVAIVKWTTWVISEKAKKGQRGLPLSYKCYACNKAWWRLMPFRDHIEQHPEDHLDVDIETGLYECNIIAFFGDDRDKRFINIQGPCPKCLNGVQQHEFYKCSDCPLVFATCTTLYKHRMECGRNTTFSISCSICNYKCCENDYKAHLSTHTVPSDEPMDSIVKIHSDCGSKYIIYNLHPCLLKSRNVYCDYCPRKFHSQLFAKLHMEIADSDVTCQVCRELLPRACMEVEHLAAHSKDFCMVYKCSLCPMPVVFPDDVSAKYHMLAWHDKIETRNRTYNDMVIVPKKIVALWQNIDPMDPNTLHTEDFQKETDEAVLSLKNLNYMNEADNVNNSSVDANTNGNNHDTRTDKIMISISDIKTEDTDFNETVEDSQIDFNETVEVSEMELNESVVDSQTDFNETVENSKIDFDVTKEEPKLEVDLSIVKTEKDYDFDIQIDGQACSAEEFEIKKEMVDCDELLSNIYRQSNAHNKFNSHNEFKACNESNAHIDEDFIKQSTFTISQRNTTVKQEIKLDSDDFDEDDLIILRPPESIFGEENIYGEIQERKPEINMFDLEPVVPLTSRKKKKIYNCNKCKFNGHHKQYKKHILEVHNRKRTIKLMVTDSLKGKKEALRNSQIMEPCYSCTKCNLEYTFHRYIKHFTVHGLPENCCPKCNVIYPEHSTLAAHIRFHIHSSFISVRIIEETREVSNIKMYQCIKCRGKVQKQHMFAHWETHLDIGKEESWEIVEENAKDVGELENVDSALPVEKLKKVIDHVLRNGSDRGKRVKPTERCCVVCLRSFDRHNDCKRHLVQHLLTDAYAHRGKYDAFKCQICGDMLEKIDKFRQHMRDHACLPIYKCELCDKMFSDSSNFTKHKKVHNLQMYTCDLCGKKFQAKVSIENHMLSHNKSPPVDCEFCGKHFSWQSDYKRHRRLIHLKSRTTFSCPICRKKFENCRTKWDHMWYVHKARNRKADCLICGKGFRKLTDLNNHTKKFHTVIDKVPPCLIGKEQKPKNYDKNGVNFKYVRRKGDEVLVVIDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -