Sbem010459.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000360.1:171492-187503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0093 0.64 11.0 0.8 2 23 666 688 665 688 0.96 2 10 0.096 6.6 7.8 0.5 3 23 697 717 696 717 0.97 3 10 0.37 25 6.0 0.7 2 23 753 775 752 775 0.92 4 10 0.00047 0.032 15.1 0.5 1 23 777 800 777 800 0.97 5 10 5.7e-05 0.0039 17.9 1.7 2 23 807 828 806 828 0.96 6 10 4.7 3.2e+02 2.5 0.4 3 22 839 858 838 862 0.90 7 10 0.0014 0.096 13.6 2.5 1 21 867 887 867 890 0.94 8 10 0.00044 0.03 15.1 3.9 2 23 897 918 897 919 0.94 9 10 2.5e-06 0.00017 22.2 0.8 1 23 927 949 927 949 0.98 10 10 0.00027 0.019 15.8 0.3 1 23 955 977 955 977 0.98
Sequence Information
- Coding Sequence
- ATGGATGGCCCTTTGAAAAAAAAGAGTACTTATTTGCAAAAATATCGGAAGGAATGGGAAACTCACGATGAGTTTAAAATGTGGTTACGGCCCGTAGCAAATAATTCTACGAAAGCATTTTGCACTTATTGTCACTGTGAAATCTTTGCAAGAATTAACGATATAAAAAAACACAATGAGACTAAAAAACATAAGGATAAATGTGACGCAATTTCAAAAAACAGAAGAATTGAATTTGTGCCAGCAGCAACCAAAAATAATACAGGCTCTTTAAAAATAGAAGGTACGTTATCATTATTTATTGTTGAACACACAGCTATTGCACAGATTGACCATTTGACTGAGGCACTAAAAAAATGTATAACAGACTCAAAGACTGTCATGGATGTAAAAATGCACAGAACGAAGTGCACTGAGGTAATAAAAAATGTCTTAGCCCCACATTTCATACAGAACCTAGTGGATGATATCGGGTCTCAACCGTACAGTGCTCTAATAGATGAATCGACTGATCTCAGTGTGTCAAAATTATTGGGCATAGTGATTAGGTACTTTAGCTGTACACATAATTATGTAGTATCTGCATTCCTTGCATTGGAACCGCTGAAGAGAGCAGACGCCCGTGGAATTGCCACTGCTTTGGTGAATTGCCTGCAAACCCATGGTTTATCACTAAAGAACCTAATAGGGATCGGTGTAGACAATGCCTCTGTCATGACTGGCATAAACAATGGATTACATAATATATTAAAAACCGAGTATGGTTTACCCAATTTAATTTTGGTGCGGTGCGTTTGCCACTCACTACAGTTGGCTGTTTCACATGCTTCTGAACAAACATTGCCTCGGAATATAGAGTTCCTTGTAAGAGAGACCTACAGTTGGTTTTCACACTCACCCAAACGGTGTGATGAATATAGAGACATATTTGAGACAATTAATTGTGGTGAGAAGCCATTAAAAATATTGCGGGCTTGTAACACTCGCTGGCTGTCTATTGAAGGAGCGGTTACCAGAATTTTGTCTCAATGGGATGAACTGAAATTGCATTTTTCATTGAACAGACAAAATTGTTACACGGCAGAGTTGCTTTATTCTATGTATGCTGATGAAGCTAATCGACTATATATGTGCTTTTTAAGGAGCATTTTGAATGACGTACAAATAGGAGTGAAGAGTTTCGAAGCTGAAGACACAAATCCAGTAGCACTACTGAATGTTCTTATGACGTTGTTTCGCTCTGTATGTAACAGGGTTTTGATGCCTTCAGTGGCGACTACTGATAAAGATTATTTGTCGATTAACGTAGAAGACCATTTGAATCCGGTACCGTATCTGGGGTTTCTTTTCGAATCCCAAGTTCAAAAGAGTTTACTGCCCAGCGTAGTCACTAATTCTGTCAGAAAACGATGCATTGAGTTCACGATTAAATTAGCAAAAGAAATTCAACAGAGACTTCCTTCCAATTACATAAAAGAATCCATTGGTGGTGTGTGCTGGGAGTGCAGAAGTCACATGTTAAAGTTTTTTAAGTTCAAGGCGAAGGTCAGAAAAGCTCAGGACACTATGTGGGATTGGAAATTTAACAAAAAGAACCTAAACCTAAATAGTGTCTCTACACTGTCAGTCTCATACAAACAGACATACGACTACGAATACACATGCAACGAAGAAATAGAAATCAAAACTGAACCCCCTTTCATGACACAAGAGACTGATATAACAGATTGCGAAATGGATGACGTGAAACCTCTCATAGAAATCGGAGATGTTTATATCGGATTTGTTAATGCGGAAGACAAAGAAACGATCCAAAGTGATAAAAAAGCTGTAATAGTTCCAAAAGAGGAAAAATTGGATGATGTTGAGATGGCATATTCCGATGAAGAAAATCATGAGCAAACAAAGTTTTGTAAAACAGTTTTCACGGAAGAAGAGATGCAAGCGAGTAGAGAATTGAAACGGAGTCATCCAAATTACATTAAAGTGCCACTGAAGTGCTATGATTGTGTGCTGGGTTTCGTAAGACAGAATAATTACGATCTGCATATGAAGAAGAAACATGGTGTGGAAGCCGGTCCATTACTCTGCGATATTTGTAAAGTGCGCTATCCATCGGACTTCGAGTTGACTAAGCACAGGAGTCAGCACTATAAGTGCTATCAGTGCAACCTGTGTCAGTACAAGAGTACAGCAATCAGAGCTATACGGAGCCACTGTTCTGGACAGCACATGATGCATACAGCCAACAAGATTCACTGCAAGCACTGCGATGTGATAGTTGAAACCGTCGAAAAGTTAAAGGAACACATTGAAGAAACGCACAAACACACTTGCGATACATGTGGAGAGACGTTCAAAGGAAAATGGGCATTGGGAAATCATGAAAGACGAATACACGGAGAAAAAAGAAAATTAATTTGCGATATTTGTACAAAAAGCTTCAGGAACAGGACTTGTCTGGAGTCCCATATAGTGACCCACGACGCCGGTGTCGCGAAGCGACTAGCGTACTGTGCCAAGTGCGACGTGCAGTACAAAAGTATATATGTGTATAAAGACCATCTGAAGAGAAGTGTTAATCATTCCACGGCATTGTTCCAATGTTCGGACTGCGACAAGAAATTTGCATCTGAAGCGTACTGGAAGCAACACCGCAATTGCGTGCACCTGCGCAAGTGGCAGAGAAAATGTAAGCTTTGCAACGAGGTGTTCAAAACGAAGTGGTCACTAAAGAAGCACAATGTGACTCACCACGGAGTCGAGAGGACAAGGAATTATTCGTGCGATGATTGTGGAAAGGAATTCTTTGAGAAAGGCACGTTGAAACAGCACATGAACTCTCACACGGGGAAACGACCTTATGTTTGTGGAACGTGTGGAGCGACCTTTAGCTACTCCGCAGCGTTATATACACACAAGAAGAATCACAAGAGGTGTAGAGCGATGTTGGAGCAGATGAAGGCGAAAGGAGAGACGAACTCCGAGAGTAATGGAGAACTGACCACCAATTAA
- Protein Sequence
- MDGPLKKKSTYLQKYRKEWETHDEFKMWLRPVANNSTKAFCTYCHCEIFARINDIKKHNETKKHKDKCDAISKNRRIEFVPAATKNNTGSLKIEGTLSLFIVEHTAIAQIDHLTEALKKCITDSKTVMDVKMHRTKCTEVIKNVLAPHFIQNLVDDIGSQPYSALIDESTDLSVSKLLGIVIRYFSCTHNYVVSAFLALEPLKRADARGIATALVNCLQTHGLSLKNLIGIGVDNASVMTGINNGLHNILKTEYGLPNLILVRCVCHSLQLAVSHASEQTLPRNIEFLVRETYSWFSHSPKRCDEYRDIFETINCGEKPLKILRACNTRWLSIEGAVTRILSQWDELKLHFSLNRQNCYTAELLYSMYADEANRLYMCFLRSILNDVQIGVKSFEAEDTNPVALLNVLMTLFRSVCNRVLMPSVATTDKDYLSINVEDHLNPVPYLGFLFESQVQKSLLPSVVTNSVRKRCIEFTIKLAKEIQQRLPSNYIKESIGGVCWECRSHMLKFFKFKAKVRKAQDTMWDWKFNKKNLNLNSVSTLSVSYKQTYDYEYTCNEEIEIKTEPPFMTQETDITDCEMDDVKPLIEIGDVYIGFVNAEDKETIQSDKKAVIVPKEEKLDDVEMAYSDEENHEQTKFCKTVFTEEEMQASRELKRSHPNYIKVPLKCYDCVLGFVRQNNYDLHMKKKHGVEAGPLLCDICKVRYPSDFELTKHRSQHYKCYQCNLCQYKSTAIRAIRSHCSGQHMMHTANKIHCKHCDVIVETVEKLKEHIEETHKHTCDTCGETFKGKWALGNHERRIHGEKRKLICDICTKSFRNRTCLESHIVTHDAGVAKRLAYCAKCDVQYKSIYVYKDHLKRSVNHSTALFQCSDCDKKFASEAYWKQHRNCVHLRKWQRKCKLCNEVFKTKWSLKKHNVTHHGVERTRNYSCDDCGKEFFEKGTLKQHMNSHTGKRPYVCGTCGATFSYSAALYTHKKNHKRCRAMLEQMKAKGETNSESNGELTTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -