Sbem013937.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- RREB1
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000539.1:42665-48925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.94 65 4.7 0.5 1 23 84 107 84 107 0.90 2 12 5.8 4e+02 2.2 0.6 1 19 149 167 149 170 0.76 3 12 0.021 1.4 9.9 0.1 1 23 298 320 298 320 0.97 4 12 0.0011 0.077 13.9 0.4 1 23 329 351 329 351 0.99 5 12 0.0007 0.048 14.5 2.0 1 23 357 380 357 380 0.97 6 12 0.0028 0.19 12.6 1.6 1 23 723 746 723 746 0.96 7 12 0.00023 0.016 16.0 1.3 2 23 939 960 938 960 0.97 8 12 0.024 1.6 9.7 5.3 1 23 966 989 966 989 0.97 9 12 0.16 11 7.1 0.5 1 23 1020 1044 1020 1044 0.88 10 12 0.12 7.9 7.5 0.1 1 21 1068 1088 1068 1091 0.85 11 12 0.0017 0.12 13.3 0.2 2 23 1131 1152 1130 1152 0.96 12 12 0.027 1.8 9.5 5.3 1 23 1158 1180 1158 1180 0.97
Sequence Information
- Coding Sequence
- ATGGAATCTTTTGTCGTTTCAGAAATCAAAACAGAGGAGGTCATCAGCGAGGCTAAAGTCGAATCAGAAAATCGTCAGGATATGGAAGAAATGGCAATCGAGACACAGGAGTCGAGGGCGACGCGCACTACGAGCATCGACAGTGACAATAGATCCGATAGAAGCGAGGAAGAAGACGCGAGACGGGCGCGGAAGCGAGCTGCGTCCACCTCGCCGTTTCCTTCGCCAGTCGATAAAAGAATCGCTCGCTTCGAATGCCCAAGATGTCGACTTCGATTCGATTCCGCGAATGTATTCGATCTCCACCGATTCACCGCGCACGGTGACGACACGAGAAGCGGCTTCGACGATCTTACATTCGTCGATTTCTCCAGCAAAAAGTTCCCCGTGATCGCGCGAGGAGTTTGTGAACGCATGTCTCACGTATCCATAACCGACCAGCGGTACAGATGTGAGTTATGCACACGAGACTTCCCGTGCGGGCAGGCCTTAGAAATTCATAGAAAGTCGTGCGCAACTCCGACTAGAGTTCTAACTCCCGAACGAGATTGCAGAGAAGACTTCTTCGCCAAACTGGATCTTAGAAACAGATCTTTAGTAATACCCGGCACGTTGACACCACCGATGGAGAGATTCACGCCAAAGTTTGAAGACAGCCATTTCTCTAACAACAGTATCAGACATATCGATTCTGCCAAAGATTTGGCTGATATACAGTCGATCTTAAACGTAACATCAGCTGGCAGTCTGCTAGAAAGATTGACTGGAACCAGAGTGGCTTTAGAAAGTGCCGTGCTGACGCCGCCAGATACAGTAGTAAAAGAACGAGAACAAGAGGAGACACAGGATAATTTCGCAGCAGAGTTCAGACGAATGAAACTGCGAGGGGAATTTCCTTGCAGACTATGTCCCGCCAAATTTCCGAACCTCCGAGCTCTAAAAGGACACAACAGAGTACATCTCAGTGGCACAGGTCCAGGACCTTATCAGTGTAACATGTGTCCACATGCCTCTTTAGACAAGGCGGCTCTAGTAAGACATATGCGGACACACAATGGGGACCGACCTTATGAATGCGCTGTATGCAACTACGCTTTCACAACAAAGGCTAATTGCGAACGTCATTTGAGGAATCGACACGCTAAAGTTACGCGAGAAGATGTGAAACGTTCAATAATATACCACCCGTCTGAAGATCCGAACAATGATGAGGTGAACTCAAAACTCGCTAGAGATGAAGTAAAAAGATCCCTTGCATTCCACACGCCTGAAATGGAACGGCGCAGCGAGTCTACAGGCCGTGACACACCATTAACCCATTTCACGCCGAGCTTTATAGCCGATAGACACCCTGTTTCTTCTTTAACACCGAAACCTTTACCAGAAATACCCACATTAACTCCTAGAGAATCTGATCAATCCATACCAAGAATTAAAGTGAAAGGTATTGGACAGTTAACGCAAATACCAGAATTCAGACCACCAGATCTAGGCTTCAAAACTAACGAAGTTCAATCAGACAGCTATGATGAAGAATCACCTGTGGACCTGAGCACTAGTGACAATAATTGCGATGTGCTTGATCTTAGTAAGAAGAAACGTGATATTGACGATGAAGAACCTAAAGCCCCACTACGGCCTGCTTTCGAACCTGACCCTGCTGCAGTTGCTGCTTCAGCATTTGAGACCAGACTGCTTTTGGCACAACAAAGACTTTTCGAAAATTCTCTCCCGAAAATTGATCCCACTTACTATGCAACTCAACTATCGCAACTATATGCTAGCGCCGTTCCAGGTCTCCCTGGTATTGCAATCCCACCGTCCTTTCCTTATTTTCTTCAACCCTCTTTTTTTCCACATCCAAATGATTCGAGAGAATTGGCCGAGATAAAGCAACGCATACAGAAGGAAATTATTCGGAATCTGAGCATGTCCGGTGGCAGGCTGGTTACTGGTGAGCAGGATACTCAGCCTAAGCAGGAGCCTGAGGAGGAAGAACAGAAACCTTTACCGCAAGCTACTTCCCCTGTTCCTCCAGCTCGTTCTGAATCTCCGAGGTCTCTAACCAACAGTCTCGGTCCTCAGACAGACTCGGTTAAGATGGTGATTAAAAATGGTGTGCTTATGCCAAAACAGAAGCAAAGGCGCTATCGTACAGAAAGGCCTTTTTCTTGCTCACAATGTTCTGCGCGGTTTACTTTACGATCCAATATGGAACGGCATGTGAAACAGCAACATCCCCAACATTGGAGCGTGAGGAGACCATCTCCGAGGGCGCCGCCGCCGTATCCTTCTGCTGACACGCTGCAAGATCGCGTTAAGTACGCTCTATTAGCGCGCCACCTTGAACGTCCGCTACAGCAGCCCGAACACTCACCAGTTCGCAGGGACTCTGACGACGTTGCCGATAATGAGGAAGATGAGGACGACACTTTGATCATTGACGAAGAGTCAGAACCAGAACGGAAACCTGAAGAGCATACAGCAGCCCACCGAGCAGCTGCTGAGATACTAATGGCATCGCGGCATCAAGAACAGAGCAAAGACTTTGATGTCAAAATAGCTGGGAATCTTATTAGCAAGCCTCCTCCTATGCCAGAAAAAACTGAGACAGGAACAGATCCCATACAACTAAATCAGGAAACAGTCGCGGTGGTGCCTACGCGTAGCGATGAAGAGGAAGACGAAGAAGGATTAGTGGCATCTACAAGCGAGGGGAACAACTCTGGAAGCGATGAAAATAAGTCCGAATCCGACACCGGTGCACAACCACCGAAAAAGAAATCGGCATACAGCCTAGCGCCTAACCGAGTGTCCTGCCCTTACTGTCACCGTAAATTCCCCTGGTCCTCCTCTCTTCGCCGCCACGTGCTCACTCACACCGGACAAAAGCCCTTCAAATGTCCCCACTGTCCTTTACTGTTCACGACCAAATCAAACTGCGACCGCCACTTGCTTAGAAAGCACGGCGGAACAGCTCGAGCTATTCTGGCCGAACCTCTCCCTGAGACTGTTGCTCCATCTCCACCTGACACCAGGACAGTTCCTGAGAGACCATTCAAGTGCGCTTCGTGTCCGACAAGCACTTTTTCCTCGTTAGAGACTTTGAAAAAGCATATGGCTGCCCGTCATAGTACCGGAGAGTCCCAACCGTGTTCCCCTAACCCGGAAAATGAAGAGGCTGTCGAAGGCGGTCTGTCGTTTAAGTGTCATCTATGCGAGGTTTCGTACAGTGATCGAAGTGGTGCGCTAGGTCACTTGGCTGCAGCGCATTCGGCTGAATATGAGCACTTGGTCAGCAAAGGAGCTTTGGAGGCAGTCAGTGATAGGAGTGAAAGTGCCGATGATGACGAACGCGGCAAGTTTCCTGATCACGCTAACCGAAAGGTCGTATGCGCATTCTGCGTCCGTCGCTTCTGGTCTGCAGAAGACTTGCGCCGTCACATGCGGACTCACTCCGGCGAGAGGCCGTTTGCCTGCGATTTATGCCGACGGCGATTCACGCTCAAACACAGCATGCTCCGACACAGGAAGAAACATAGAGACGAGATCACGGACGACGAAGAGGCCTCCCCGCCTAATACGCCTTCGGAAACTGACGGAATTAATGGGTACCGATATCCAGATGACGATGGTTCCGGCAACGAAGTACCAACCAACGTGAACAACAATAACTCTCCGCCCGCTGCGCCTTACGATAAAAAACTCAAACCCGACATAATCCCGCGCAAATACTCCTCAGAAACCGAAAATGACGGCGAAAATGGTACCGATCTCATTGGAAAACTACTCGGAATACAAGATAAAAGCATTATTAATAAACTACTTTCGTCCCCCGACGAGGCCGCGAAATTTCTCGGAGTACACAAATGA
- Protein Sequence
- MESFVVSEIKTEEVISEAKVESENRQDMEEMAIETQESRATRTTSIDSDNRSDRSEEEDARRARKRAASTSPFPSPVDKRIARFECPRCRLRFDSANVFDLHRFTAHGDDTRSGFDDLTFVDFSSKKFPVIARGVCERMSHVSITDQRYRCELCTRDFPCGQALEIHRKSCATPTRVLTPERDCREDFFAKLDLRNRSLVIPGTLTPPMERFTPKFEDSHFSNNSIRHIDSAKDLADIQSILNVTSAGSLLERLTGTRVALESAVLTPPDTVVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEMERRSESTGRDTPLTHFTPSFIADRHPVSSLTPKPLPEIPTLTPRESDQSIPRIKVKGIGQLTQIPEFRPPDLGFKTNEVQSDSYDEESPVDLSTSDNNCDVLDLSKKKRDIDDEEPKAPLRPAFEPDPAAVAASAFETRLLLAQQRLFENSLPKIDPTYYATQLSQLYASAVPGLPGIAIPPSFPYFLQPSFFPHPNDSRELAEIKQRIQKEIIRNLSMSGGRLVTGEQDTQPKQEPEEEEQKPLPQATSPVPPARSESPRSLTNSLGPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPSADTLQDRVKYALLARHLERPLQQPEHSPVRRDSDDVADNEEDEDDTLIIDEESEPERKPEEHTAAHRAAAEILMASRHQEQSKDFDVKIAGNLISKPPPMPEKTETGTDPIQLNQETVAVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGAQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGTARAILAEPLPETVAPSPPDTRTVPERPFKCASCPTSTFSSLETLKKHMAARHSTGESQPCSPNPENEEAVEGGLSFKCHLCEVSYSDRSGALGHLAAAHSAEYEHLVSKGALEAVSDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDEITDDEEASPPNTPSETDGINGYRYPDDDGSGNEVPTNVNNNNSPPAAPYDKKLKPDIIPRKYSSETENDGENGTDLIGKLLGIQDKSIINKLLSSPDEAAKFLGVHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01387140;
- 90% Identity
- -
- 80% Identity
- -