Sbem021821.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010001603.1:13293-15139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4e-05 0.00094 19.9 1.3 2 23 170 191 169 191 0.96 2 10 5e-05 0.0035 18.1 0.1 2 23 200 222 199 222 0.95 3 10 0.0012 0.081 13.8 1.9 2 23 228 249 227 250 0.90 4 10 1.9e-05 0.0013 19.5 2.7 2 23 254 275 254 275 0.98 5 10 0.072 5 8.2 1.6 3 19 280 296 279 299 0.86 6 10 4.8e-05 0.0033 18.2 1.0 1 23 308 331 308 331 0.97 7 10 0.0035 0.24 12.3 0.1 2 23 338 359 337 359 0.94 8 10 0.00062 0.042 14.7 0.5 1 23 365 387 365 387 0.98 9 10 2.6 1.8e+02 3.3 1.3 1 12 393 404 393 416 0.72 10 10 0.0027 0.18 12.7 9.4 2 23 422 443 421 443 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTTGATAGTAATATAATGGTAACAGCTCTGAAATTTGTGAGCGGTGAAAATGAACACATTTGTAGGTTATGTTTTACTATAATTGAAGACCAAGAAATATCCCTTGAAGAGACCGTCGAGTTGCAGAAGGATTATTTTGATGGAGTCGTCACGTTTACAGACATATTTCATGATCTTGGCATACCAACGGAGCCAATGCTGCCACAGGTGATTTGTATGAAATGCACAGGCCATGCAATAAACAGTTACTTATTTCAGAAACTTTGTCAGCACTCCAGTGAGGAGTGGAACCAAGTGCTGGACAGACTTAATGATGGCCTTTCACAGTCCAATGTAATAGATTCTAGTTGTAATACACTGTATCTTTTATTTAATCAGAATGATACTTTACTAATCACCAGGCGAAAATCTAATACAGGTGAAAAGAAAACAGCGCTAGCCAAAGTAAGGAGCATAATGAAAAGCAGAAGTAATTACCTCAAGATCAAAGAAAAGAAATTATCCTGCGCAGAGTGTAATACAAAGTTCAAGTCTAAATTTCTATTGGCAAAGCATATGAGACTGCACAATAAATTCCAAAATCCTTCAGTTCCATGTCCCCAATGTGATAAAGTTTTCATAACAAAGCTGCAGTTGGCGACTCACACTGAAAGAGTTCATTATCCAAAGAAAATACAGTGTCCAAAGTGTCCAAAAAAGTTTAGCACCGAACGCTTGTTGTCTTATCATGACAAAATGCACCATGTAGCTGCAAAATGCAATCTTTGCCACAAACCATTTCCATCGAAGAAAGAATTACGAATACACTTAAATAGACATGAGGTGCCGAACTGCCCACGATGCTTCAAAAGTTTCAAAAACAAAACCACATACAAATTTCATTTAACAATATGCGGGACTGTGAAAGAACTTAAATTTTTCTGTGATCTTTGTAATAAGGGTTATGTGCGCAAGAATGGTTTACGGTCCCATCTGAAGACAGATCATGGATTTGGTGAAGTTATTTCTTGTGAATGGTGCGGGAAGAAGTTTGATGCTATAAGCAAATTGAACAATCATGCAGTTAAACATACTAGAGAAAGAAACTTCCAGTGTGAGCAATGCAATGGGAAATTTGTCACGAGGGCTGCGTTACTTTATCATACAAGATTACATACAGGAGAACGTCCTTTCCCTTGCGATTTGTGCAACGAAAGTTTTCTATCAACTTCAAGGAGGATGGAGCACAAACACAGGAAACATTTTGGGCCCACAAAAGAGTGTCACATGTGCCATATGAAGTTTACAACTACCCATCAGTTGAAAAAACATGTTCAAAGACATTACAACCCTCAAAGTAAGTTGTATGTACCAGATACAGATGGGACAAGATACAATTATGAAAATGAATATGAAACTTGA
- Protein Sequence
- MVFDSNIMVTALKFVSGENEHICRLCFTIIEDQEISLEETVELQKDYFDGVVTFTDIFHDLGIPTEPMLPQVICMKCTGHAINSYLFQKLCQHSSEEWNQVLDRLNDGLSQSNVIDSSCNTLYLLFNQNDTLLITRRKSNTGEKKTALAKVRSIMKSRSNYLKIKEKKLSCAECNTKFKSKFLLAKHMRLHNKFQNPSVPCPQCDKVFITKLQLATHTERVHYPKKIQCPKCPKKFSTERLLSYHDKMHHVAAKCNLCHKPFPSKKELRIHLNRHEVPNCPRCFKSFKNKTTYKFHLTICGTVKELKFFCDLCNKGYVRKNGLRSHLKTDHGFGEVISCEWCGKKFDAISKLNNHAVKHTRERNFQCEQCNGKFVTRAALLYHTRLHTGERPFPCDLCNESFLSTSRRMEHKHRKHFGPTKECHMCHMKFTTTHQLKKHVQRHYNPQSKLYVPDTDGTRYNYENEYET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -