Sbem008891.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000306.1:604273-606903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 11 7.1 0.1 6 23 218 235 217 235 0.98 2 14 9.7e-05 0.0066 17.2 1.1 1 23 265 288 265 288 0.97 3 14 0.2 14 6.7 0.7 2 23 349 371 348 371 0.96 4 14 0.0023 0.16 12.9 1.7 1 23 377 400 377 400 0.96 5 14 0.021 1.4 9.9 0.2 2 20 405 423 404 425 0.93 6 14 0.0011 0.075 13.9 1.2 1 23 433 456 433 456 0.96 7 14 0.0024 0.17 12.8 0.6 1 23 461 484 461 484 0.95 8 14 8.5e-05 0.0058 17.4 0.2 2 23 497 518 496 518 0.97 9 14 0.0023 0.16 12.9 1.2 1 23 524 546 524 546 0.98 10 14 3.2 2.2e+02 3.0 0.1 1 17 581 597 581 598 0.82 11 14 0.0049 0.34 11.9 1.4 1 23 641 663 641 664 0.96 12 14 0.00017 0.012 16.5 3.0 1 23 670 692 670 692 0.98 13 14 1.1e-05 0.00073 20.2 1.6 1 23 698 720 698 720 0.98 14 14 2.8e-05 0.0019 18.9 0.5 1 23 726 749 726 749 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAGATTATAATGAATTAAGTGACGGAGTTCTAAAAACAGATTTTGAATTTAATTTAAAGGCAAAATTACAAAATATAATCCAGTCAAATCAGTTTTGTGGTATATGTTTGGAGAGTAATAAATACTTGACTTCATTAGATGATGAAATTGAAGTCATTGGAAACAACATCAATCCACGCAATGCCAGAACTAAAATAATGGAAATAATTAGATATGTATTTAGGGATGAAGTGCATCATTTTCTGACTGGTGGACATATATGTGATGAATGCTTATGGAAAACAGTAGAGACATCCAAATTCATTATAAATACACAACAAACTTTGAAAGTACTAGACAACTACGTGAAGGATTTGTATTTTAAAACTTTTGAGGCAATCAATCAATTTCACTCCTGCAGTCATGAAAAATCCGATGTTATTATTGTCCTAGAAAAGGAAAATCAATATAAAATGACAGTTATAGATGACAATAGTAACACAATGGAAGATACTGTTGTACTTGTGGAAAGAAGACCAGAAGATGATAAGACTGACTCAAAAGACAGTATGAAATCTAAGAAAGTAGAGAAACTAAGAGCATCAGATGAAGAATACAAGGGGACTGAAAAAAATTTCAATGAAAAGCATATGTTTGAATGTGCATGCAAAAAAAGTTTTGATTCACTGGAACCTTTAATTGCACATAATAAAACACACTCAAAAGTAAAATGTTTGATCTGCAATGAATTTGTACCTGATAACAATTTGATTGAGCATTTGAAATTGTTACATACGGATAATGTGCACCAATGTCCTATTTGTAACCTTACTTATTATACTAATGAAACATTAATGATGCATTTAAAAATTAGCCATGGGTCTCGAGATAAAGATACTGGACAGCAGTGCATAATGTGCTTAAAACATTTCAAAAGTGGCAATTTTGAAATACACAAATGCAAATACAGATGTCTAGAATGTTCAGAAAATCCTTGCATTCATTACAAGTATTTGGTTTCCTTTCGTGACCAAATTAAGTCTGGCGATAGTAAAATAAAATGTCTAGACTGTGATTACATATGTTACGGAAAGGATTTTTTTCTGGCACATGTGAATAGGGAACATTTGAATCATCATCCATTCTCGTGTAATATGTGTGGTCAACATTACTATTCCAAAGCAGCAGTCAAAGCTCACATATACCGTTTCCACACAGCATATATTGTTTGCAAGTTCTGTGATCAGGAGTTTAGAAAGAGGGCTACTTATGAGAATCATGTAGAAAATTGCAAGATGACCAAAAAGTCATTCAAATGCAGGATGTGTCCTGCATCTTTTGATTCTTTAAAGAGTCTTACAAATCATAAAATACGTAGACATACGGTAAATACATTTCCCTGTAGCTTGTGTAACAAGACATTTTTAACAAATGGGAAATTGAAAGAGCATACAGCAAAAGTTCATAATGGCCTGCAGATCAAAATTAGAAGACACACTACAGTTTGTGCCATCTGCAATGTAGATTTTGACACAAAAACAGATTTGCTGCGTCATATAAAAACACATGGGAAAAATGTTAAATATCCATGCAGGCAGTGCAATTTGGAATTCGTAACAGTGAGAAAATTGAATCTGCATAGACGAAAGCATTACCGTAGAAAAGTGCAATGTACAGTTTGTATGAAATGGTTGACTGAAGTATGCCTTCCAAATCACATGCTCCTCCATACTTCTAAAAAATGTGAGGCGTCTTATGTTTGTGAATTTTGTGGAGAATTTGTTTCCCCGAAAATATTGCTAAAAAACAGCACTCAGATTGATCAAAAGCCATTGCCTTGCCCTAAATGTAGGAAACCAATTCCTCCATCTATTTTTACTAAGTACTTTCTCAACCTGAATGAGCAAAGAATGAAAAGAATGAAATACAAACGGTATAAATGTAACTCCTGCAACTACATAACGTCTGATGCCCTTAGTCTAGAGACCCATGTGAATAGGCATCATTTGATGAAAAGACCTTATATATGTCATATTTGCGGAAAAGACTTTTGCGGACAAAACATGTTGGACAAACATATCACAAGACATTCTGTGAAGAAGCAATATTACTGTGAGATTTGTAATAAGGCATTTGTTAACAGTGTATGTTTGCGAATGCATTTGCGACTGCATACTGGAGAAAGGCCTTACAGATGTGATGTTTGCGATGAAACATTTATATCAGCTAGTTCATTAAGTACACATAAGATAAAGAAGCATAATGAGAAAACTGTCCAATGCCCAATTTGTGGCAGCTTGCACTATTTGGTGCGACTCATGAGACAGCATTTTAAACAGGTCCATTGGCCGTATAAAGACAGACCCTTTAATCATAGGGAAGTGAAAGGGTTGAGTGAAGACCACTATCATCTTTTTGAAGATGGTAGAAACAAGATGCAAAAAGGGATTAAACATACTGATTGA
- Protein Sequence
- MDEDYNELSDGVLKTDFEFNLKAKLQNIIQSNQFCGICLESNKYLTSLDDEIEVIGNNINPRNARTKIMEIIRYVFRDEVHHFLTGGHICDECLWKTVETSKFIINTQQTLKVLDNYVKDLYFKTFEAINQFHSCSHEKSDVIIVLEKENQYKMTVIDDNSNTMEDTVVLVERRPEDDKTDSKDSMKSKKVEKLRASDEEYKGTEKNFNEKHMFECACKKSFDSLEPLIAHNKTHSKVKCLICNEFVPDNNLIEHLKLLHTDNVHQCPICNLTYYTNETLMMHLKISHGSRDKDTGQQCIMCLKHFKSGNFEIHKCKYRCLECSENPCIHYKYLVSFRDQIKSGDSKIKCLDCDYICYGKDFFLAHVNREHLNHHPFSCNMCGQHYYSKAAVKAHIYRFHTAYIVCKFCDQEFRKRATYENHVENCKMTKKSFKCRMCPASFDSLKSLTNHKIRRHTVNTFPCSLCNKTFLTNGKLKEHTAKVHNGLQIKIRRHTTVCAICNVDFDTKTDLLRHIKTHGKNVKYPCRQCNLEFVTVRKLNLHRRKHYRRKVQCTVCMKWLTEVCLPNHMLLHTSKKCEASYVCEFCGEFVSPKILLKNSTQIDQKPLPCPKCRKPIPPSIFTKYFLNLNEQRMKRMKYKRYKCNSCNYITSDALSLETHVNRHHLMKRPYICHICGKDFCGQNMLDKHITRHSVKKQYYCEICNKAFVNSVCLRMHLRLHTGERPYRCDVCDETFISASSLSTHKIKKHNEKTVQCPICGSLHYLVRLMRQHFKQVHWPYKDRPFNHREVKGLSEDHYHLFEDGRNKMQKGIKHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -