Sbem009907.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sesia bembeciformis
Gene Symbol
-
Assembly
GCA_943735985.1
Location
CALSEZ010000343.1:37920-54380[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 7.7e-05 0.0053 17.5 1.2 1 23 286 308 286 308 0.99
2 12 0.016 1.1 10.2 1.7 1 23 316 339 316 339 0.92
3 12 0.0005 0.034 15.0 2.4 1 23 441 463 441 463 0.99
4 12 0.022 1.5 9.8 4.2 1 23 471 494 471 494 0.97
5 12 0.0047 0.32 11.9 2.4 1 23 498 520 498 520 0.98
6 12 6.8e-05 0.0047 17.7 3.4 1 23 525 548 525 548 0.98
7 12 0.26 18 6.4 2.2 1 23 552 575 552 575 0.84
8 12 4.4 3e+02 2.6 0.0 2 20 595 613 594 615 0.92
9 12 0.39 27 5.9 0.4 2 23 659 681 658 681 0.89
10 12 3.2e-06 0.00022 21.9 1.3 1 23 690 712 690 712 0.98
11 12 0.00068 0.047 14.5 0.8 3 23 720 740 718 740 0.96
12 12 5.2e-06 0.00036 21.2 2.6 1 23 746 769 746 769 0.98

Sequence Information

Coding Sequence
ATGTGGGATTTAAAAGCGTGTACAGTGTGTTTTAGCACAGATCTAAACCTCTTTGATATGGACAGTGGGCAATTAAGACTGCAATACAACTTATTAAGTGGACTCAAGGCAGATCAATGTGTTGGAATGCCTCAATACTTATGTGTGCAATGTGCAGCGTATGTGCGACGCTTTGTAAAATTCAGGCAGAAGTGCCAACGAGCATATTATGCTTTAAAAGAAATACTATATAGAAATAAGGAGATAAGACTGTCCCACTTGGAAACTTTTGACCGAGAGCTGTTAGGTTTGACGCCTGCATTATCATTTGTAGACCCAAAGAAATGTCATCATGAAGAAGTGAAATTCCAATGGATGAAGTACAATCGCCTTAATGTTTTAAAAAAAACTAACATACCCGTCATACAGAAAACTACTTTAAATGATGATATGATCTTTGAAACTCCTAAAAAAATTGCAGAAGATTATGTTGTAATTGAAGTGCCTCAAAAAAATGTGGAGTTAGAGCTCGAATATGTAAAGAAAGAAAATGATGATGCAATAAATAGTAATTTAAATATAACTTTTGATGATCTAAACTATGTGTGTAAAGAAAAGAATCAGTCAGAACCTGTTAATGAAAATAATGTTAATGAAGTTGTCTCTAATGATTTGAGCAATGTTGAAAGCCTTTTTGACAATGATAATTTTAATAGTGATAATGAATTTGAAAATACAGAATCCTACAAAATTGATAAAACAGAAGATCCGGCAGATGGTTGTAATTTAGAAGAAGAGTATGCAAGTATGATTCCTTTGTCTGTGAATGAGGCGAAGGCTGTTGTGGAAATCTATAAAATGTTCAGTCATGGAAAGTATCGTTGTAAAATTTGCAGTAAAGGCTACAATACAGAAAACCGCTTGACGGTTCATTTGCGGATGCATGATAAGCACGTGAGTGGTATATTTTTATGTGAGTTGTGTAACTACTATTACAAGACAGAATTCCTGCTGAAAACCCACATGACAGAGAAACACATGTACAAATATGTTTGCAGGAAGTGCCCTGAAGTTAATTTTGATAGAATCTCAGCAAAACAACACTACATCTGGACTCACTTGCAAAAGGGTCATAAGAAGGACGCAAACTGGTATGATTCTCGGCCCAGTTGGCTCAGTCCCAAAGGCGGGAAACGCGTCAAAGGCATCGTTTCTTTGAAGCCTGTTCGCAAAATAAAGAAGCTTCCAGAAGACTTCCCCGCTTACTCCCCCATTAGTCATGAAGAACAGTACATTATGGTGTCACAGAGAAAGAATACGAGGAATTATTTAGACGCGAAGTATAGATGTGAATTGTGTTATAGAGGCTTTAGAGAAATGGAGACATATAATAAACATATGAGGAAACACGACCCGGAGTTCGCCGGTCCGTTCCAATGCGACATGTGCAAGTTGCACTTCACGGACACGCGGCGCATGTACAAGCACATGAACATCACACACTTATTCAAGTACACCTGCCAGCTCTGCAACTACGTATGCACTAATAGGGGTCAGGCACAAATGCATTACAGGTGGCACAAGAATGTCACGTATCAGTGTCCTCATTGTAAGAAAGAATTCAAGAAAGCGTCCACACGTCTGACTCACATCCGCATAAAGCACCCGTCCACGTACATCTGCAACATCTGCGGGCACAGCTACGTCAGCGAGACCGGCCTCTACTGTCACAAGAAACTTGTACACAGTAAACATGAAATAGAGGCAAGTGACGCAGTGTCAGTGGACACGTCCCATGCACTCTACTGCGCGGAGTGCCGCGTGCAGTTCGTCTCCGAGGCGGCGTACTCCACGCACCTCGGTAGCTCCAACAAGCACTCCTCCACCAACTTATCGATAAAGCCAGTGAAGCGGGGCTCAGGAGTGCGTCGGAAAGCCGGGCGTCCGAGCCGGGCGAGCTCCGAGGTTCTCAACAACGGCGTCGCCACCGCGACCAGCTGTGACCTGTGCGGCAAGCACCTGTCGAACGACGTGGCGACGCGGCGCCACTATGAGGCGGCGCACCCCGGCGCGGAGTTCCCCAAGCGGTACATGTGCGATGTCTGCGGCCACACCACCAAGCAATACGCGAACCTGATGGTGCATATGCGCACGCACACGAATGAGAAACCTTACGGGTGTCCGCACTGTGACCGCCGGTTCAGCATGCCCAGCAACCGCGACAGGCATCTCGTGGTGCACACCGGCGAGAAACGCTACCAATGTCAACACTGCAACCGCCGTTTCACACAAAGCAGTGCTGTCAAATTACACATACAAACTGTCCATTTAAAAATACCCTACGCACCGTGGGACAAAAAGAACCGGAAACGGCGCAAAGAACAGGAGAGCTATGGAGCTCCTTTGGCCACTGTTAATGCAACACCTTTCTTACCACAACCGCCGAAATTAGTTCTGGACACAGCTGGGGACTATCTAAACGCTTTTATTACATATAATGACGAGTAA
Protein Sequence
MWDLKACTVCFSTDLNLFDMDSGQLRLQYNLLSGLKADQCVGMPQYLCVQCAAYVRRFVKFRQKCQRAYYALKEILYRNKEIRLSHLETFDRELLGLTPALSFVDPKKCHHEEVKFQWMKYNRLNVLKKTNIPVIQKTTLNDDMIFETPKKIAEDYVVIEVPQKNVELELEYVKKENDDAINSNLNITFDDLNYVCKEKNQSEPVNENNVNEVVSNDLSNVESLFDNDNFNSDNEFENTESYKIDKTEDPADGCNLEEEYASMIPLSVNEAKAVVEIYKMFSHGKYRCKICSKGYNTENRLTVHLRMHDKHVSGIFLCELCNYYYKTEFLLKTHMTEKHMYKYVCRKCPEVNFDRISAKQHYIWTHLQKGHKKDANWYDSRPSWLSPKGGKRVKGIVSLKPVRKIKKLPEDFPAYSPISHEEQYIMVSQRKNTRNYLDAKYRCELCYRGFREMETYNKHMRKHDPEFAGPFQCDMCKLHFTDTRRMYKHMNITHLFKYTCQLCNYVCTNRGQAQMHYRWHKNVTYQCPHCKKEFKKASTRLTHIRIKHPSTYICNICGHSYVSETGLYCHKKLVHSKHEIEASDAVSVDTSHALYCAECRVQFVSEAAYSTHLGSSNKHSSTNLSIKPVKRGSGVRRKAGRPSRASSEVLNNGVATATSCDLCGKHLSNDVATRRHYEAAHPGAEFPKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKEQESYGAPLATVNATPFLPQPPKLVLDTAGDYLNAFITYNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-