Sbem010453.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- Zbtb8b
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000360.1:103955-115156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00018 0.012 16.4 0.4 1 23 258 280 258 280 0.98 2 11 0.022 1.5 9.8 0.2 1 20 284 303 284 305 0.94 3 11 0.00042 0.029 15.2 3.6 1 23 314 337 314 337 0.98 4 11 1e-06 7.1e-05 23.4 1.3 3 23 343 363 342 363 0.97 5 11 0.0057 0.39 11.6 3.4 1 23 370 392 370 392 0.98 6 11 0.68 47 5.1 0.4 3 21 402 420 401 425 0.89 7 11 0.0004 0.027 15.3 4.1 1 23 433 456 433 456 0.95 8 11 6.1e-05 0.0042 17.8 1.3 1 23 462 485 462 485 0.96 9 11 0.044 3 8.9 0.4 3 15 496 508 495 509 0.89 10 11 3.4 2.3e+02 2.9 0.3 13 23 526 536 523 536 0.90 11 11 4.6e-05 0.0031 18.2 0.4 1 23 542 564 542 564 0.98
Sequence Information
- Coding Sequence
- ATGGCACCGTTAGCTAGGACAGCTCTTGACTACTGCGGCGGCGCGGCGCATGCGCAGAACTCCTGCGCACCGGGCCGGCCGGCGCACGCGCGGCGTTTTAACTATAAGCGCCGAGCGATTCTACCTTCTAAGAATAATCCATTACCCATCTTATCAAATCTGAGTACATGTTCAACCCACAATTTAACATGTACGGGAGAATCCAAAGCAGTCATCGAAAACGACATAGTTGTAAAGTCAGAGCCTGAGGATGTCGACTTAAATATGAATACTGAAATACCCGAAAATGATCAATATGTTCATCGAGATCCAGGCCAAAGTATAGATGAAGAAGAAATAGATATAGAATCAAAAATTAGTGTTAAAATTGAAATTAAAAGTCTAAAAGAAACAGTTGAAACACAAGATAAAAATCCTCCTGTGAAACAAAGTCAAGCAAAGGAATTATGTGCAGAATTGCATAGTAATCGCACAGTTTTGACACCACCATTGCTTAAAAAGAAGACATCCTCTTCTCAGGTGATAAATCAAGCCCCCTTACGTATCACAACCGAACCTACTGTCGGAGAGACCATAAACACGCATGGAGTCTTAAGGGCAATAAATTTATTCACTGTCAAAGAGTTGACACACAATGAAATGTTGTTCGTCCGAGATAAAATGATGGAAGTTGAAAAGTCTAAAGCCAGCAAACAAGTGATACATTTCAATAAAATTCCAAACCAAAAAAGTTTGGATAGTACGACAATACTCTTACAGGAGGCAGGTCATTATAAATGCAGTGTTTGCAATCAAAAATTCGGTGATGAAGCGTTATTACGATTGCATGAGAAAATGCATACGAGAGTATACAAGTGTCCGAACTGTTCGGAGGTATGTCCGTCTGCGGCGTTAGCGCAGCGACACTATGAGCGATGCACCGACAAACATACACACGTTTATGAATGCAACGAGTGCGAGGAGCAGTTCACTAAACATAATGATTATCGTCGGCACAAGCGCGTCACGCACCCGCCGATTGCGATCTGCGACCACTGCGGGAGACAGTTCACTTCTAAATACAATCTCGCCAGACATCTCCTAATCCACTCGGGCAATGTACCAATGTTTGAATGTAAAATATGTAAGAAAAAGTGTCGTTGGCAAACTGGGCTCTATATACATATGAAGATGCACAACGATAAAAAAGACGAAGCTGCCTACTGCGCCGACTGTGGCGTCCAGTTCAGGAACATGTATATTTATAGGAATCATCTAAAGAACACTCTGAAACACGTCAAAAAACAAGATTTGAGGTTTCCATGTCCGCACTGTGAAAAGAGATTCAACTCTAACTCATACCTAAAATGTCATATCGAGTCGATGCATTCCAACAAACTGAATCATCCCTGCAACATGTGTGACCAGAGTTTCAAAACGCGTATCCGTCTCCGTGCGCACGCGCGCCGCGCGCACGAGGGCTACGTGCAGCCGAGGAACAACATGTGCAACGTGTGCGGACACACGTTCAAGACGCAAAAAGAATACCCTTTCATAGATAATGTCACAGTTAATGGTACATTATGTTCTCAGGAGAAAGCCACGTTAAAACAGCACATGAACTCTCACACGGGGAAACGGCCTTATGCCTGTGAAACGTGTGGAGCGACCTTTAGCTACTCCGCAGCGTTATATACACACAGGAAGAAGCACAAGAGGTGTAGAGCGATGTTGGAGCAGAAGAAGGCGAAAGGAGAGACGAACTCCGAGAGTAATGGAGAACAGACCACCAATTAA
- Protein Sequence
- MAPLARTALDYCGGAAHAQNSCAPGRPAHARRFNYKRRAILPSKNNPLPILSNLSTCSTHNLTCTGESKAVIENDIVVKSEPEDVDLNMNTEIPENDQYVHRDPGQSIDEEEIDIESKISVKIEIKSLKETVETQDKNPPVKQSQAKELCAELHSNRTVLTPPLLKKKTSSSQVINQAPLRITTEPTVGETINTHGVLRAINLFTVKELTHNEMLFVRDKMMEVEKSKASKQVIHFNKIPNQKSLDSTTILLQEAGHYKCSVCNQKFGDEALLRLHEKMHTRVYKCPNCSEVCPSAALAQRHYERCTDKHTHVYECNECEEQFTKHNDYRRHKRVTHPPIAICDHCGRQFTSKYNLARHLLIHSGNVPMFECKICKKKCRWQTGLYIHMKMHNDKKDEAAYCADCGVQFRNMYIYRNHLKNTLKHVKKQDLRFPCPHCEKRFNSNSYLKCHIESMHSNKLNHPCNMCDQSFKTRIRLRAHARRAHEGYVQPRNNMCNVCGHTFKTQKEYPFIDNVTVNGTLCSQEKATLKQHMNSHTGKRPYACETCGATFSYSAALYTHRKKHKRCRAMLEQKKAKGETNSESNGEQTTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01341674;
- 90% Identity
- -
- 80% Identity
- -