Sbem013653.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000520.1:865723-906659[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.041 2.8 8.9 0.1 2 23 471 492 470 492 0.89 2 17 0.042 2.9 8.9 0.1 1 23 502 525 502 525 0.95 3 17 0.0043 0.3 12.0 2.7 2 23 744 765 743 765 0.96 4 17 5.8 4e+02 2.2 1.1 1 23 777 801 777 801 0.86 5 17 3.7e-05 0.0026 18.5 0.3 2 23 808 831 807 831 0.97 6 17 0.079 5.4 8.1 0.2 1 23 837 859 837 859 0.93 7 17 0.014 0.96 10.4 3.4 1 23 865 887 865 887 0.98 8 17 0.14 9.7 7.3 0.0 2 19 898 915 897 918 0.90 9 17 0.16 11 7.1 0.2 1 23 998 1020 998 1020 0.96 10 17 2.3 1.6e+02 3.4 7.2 1 23 1027 1049 1027 1049 0.95 11 17 0.0016 0.11 13.4 1.8 1 23 1085 1108 1085 1108 0.95 12 17 0.0018 0.12 13.2 1.1 1 23 1115 1138 1115 1138 0.98 13 17 0.0043 0.3 12.0 0.2 2 23 1158 1180 1157 1180 0.96 14 17 0.00077 0.053 14.4 0.2 2 23 1227 1249 1227 1249 0.94 15 17 0.00034 0.024 15.5 0.2 3 23 1256 1276 1254 1276 0.97 16 17 0.00029 0.02 15.7 2.4 1 23 1281 1303 1281 1303 0.96 17 17 0.43 29 5.7 0.0 1 13 1309 1321 1309 1322 0.93
Sequence Information
- Coding Sequence
- ATGGAGGAAAGTCAACCTCCATTGATTATGTGTATGGAGAACGCGACTGGAGAAGATGTGGCGCTCCAGATAGAACCAGAGGACAATTTTCAGACATTCCTAGATAAAGCCAAGTCTCTATTAGGCTTCGACATAGACATCAACTCCATAACTAGAAACCAACCTGTCTCTTTAGAAGACAACATTTACCAATTCCTCGTGAACGCCGAACAAAATCCTTCTGATGGTACACTGTCTACTTTTTACCCATTACTAGAGCCAACTGATAGCAAAAATGACTTAGTTTACATTTTAGATGATGGTACTCAAATAAAAGCATCCCAAATTCATTTTGATAATGACGATCCACCTGTAGATCTAACTACTGAGAAATTGCCATTCGTCCAGCATGCCAATACTACAGATGATGAGTTAGAACCTGAAGTAGCTGATGTGCAGAAAATTAACATAATAGAAAGTCCAGTTTCTCGTTGGTCGAGTAATTCAAGTCCTAGATGCGATTTCGGCAATACTCTTCCTTTCAAAGTCATCTGCAATAATACTTCTGGGTTTGAGGTTCAGTTTACTAAATACTTAGAGGAGAGTACTAGATCTTACGTTTCGAATGAACTTTCAATTAGAGAAGACTATAAAAGTTATGACGATGATCAGAACGACAGGGATTTTGGTGCCTTTACTCGTGAAGAAGTCCTCAATATGTTCAAAGATTCTCCTGTCGCTTCATTGCCTTATGAAAACCAGAACTTTACTGAAAGGAAACACGTAAGAAAGACTGATCCTCTAAGACCTGTACAGAAGAATTGGAATTATAAACCGATATCATACATTGACGTAGACGGAACTTTAATTGGTCAAAATGAGAGTCAGGACTGTTGCATCTGCGGAAGATTTATCGAAAATAGTTTAGATAAGTTGTATTTATTTGATAATGAAGATCAAAGGTTACATCGATTGTCGCCGCAAAAGAAATTGTCTACGCAACTGAAGATTCTCTGCCAGGACTGTCTGGAAGAGAACTTCAAACCTTGCTTTATGAAAAATCCGAATCAGCCTTTAAATACTGATGAGTATCTGATTATTAAGAACAATCAGCAGTATATTTATCAAAGAATCAATGATATTCATGGCTTCCATGTCGCCAAAGCTGTCTTAGAAGACATAGATTCAGAGGTCTTTAAAGAAATAGAATTTTCTAAGCTACAGATCGCTCCCGATTTTGAGAAAATAATTGGATGCATTGAGACCGACCAGAAGTCTAACGAAGTGGTCTTAGTGAAAGATGAAGATTCAAGTGATGTTGAAATAATTGAGGAACCGGAAATAGATGATATAGAAAATTTGGAAGAGGCAGATGAGGAAGTGAAAGAGTTTTTGGGGAAATATAAATGTGATGGTGAAGTGAAGGAGATGAAATGCAGATTCTGCAACCGCGTATTTTCGGATCTATCGGAAGTGGTAGATCATGGCGAAGCGCATAAACACGACACTGACGACGGAGAAGTATTTCCATGTCCACTCTGTTACTATGGCTATGCCAATTACAAATGGTTAAAAGGACATTTAAAAGCCGCTCATGATAAAACGGAGAACAATACTGAGGAAATAAAAAAAGAACATAATGTCTCTGATGAAGTAAAGAAAGAAGAAGATTCAGATGCGAAAGGAAGCTCACCCATCGCCAGAAGAACGAGGAGTGCTGATAAAAATAAAAATAATGTTGATAGTCAAGAAGAAGAGAAAGATTTAAAACCCACAAAAGATAACGATAATAATACAAATAAGGAGGCAGAAACGAAGACCGTGGAATCGACAGAAGCCACTAGATTAATAAAGACAGAAGTGAAACAAGAATGTCTTGATACTAGCGATGAGGAAGCAATATGGATCGTTCACACGGCTGATGATGACTCAGCTGAACAATTGCAAAGCATATTGTGTAACAAGGGTACGGAAAAATCCCAGAGGGATGGTTACAAGAAATTGACTAGATGTCTAAATTGCAGCGAAATCTGTGCGGAAGGCGCATCGCCTCACAAATGTCAACGTCGCGGGCGCAAAAGGAAAACAATTAAAGGGCAAATGGAGATATGTGTACCCACTGAAGAGGACTTCATTAGGAGGGCCCAAGGAAGAGCTAGGCGTGTGGAGGAATCCAATGACAATGATCTTCTTGTAGAGAGAACTACTAAAAGGAAGAACAAGCAGCCAACATCAGATCCTCAAATTGTCACGTGTCATGACTGTAATGAGTCGTTCACATCTAAAGTTAGACTCAAATTTCATATGCAATTGCACGAGTCAACCAGCATGCTAAGCAAAGACGGCAAGTACACTTGCACTGAATGTGAAGGCAGTATTTTCACAACGGAAACTGAACTGTTTGATCATGTGCACTTTCAACATAGCAAGCAAAGACGCTGGCAATGCCCTGTTGAGGACTGCGGGAAGACTTTCTATTTGAGAGCCACCCTGACGAAACACAGTCGCACGCACACAGACACGCGACGTTACGTGTGTGTCACTTGCGGAAAACGGTTCCTGGACAAGCAGACTTTAGACGAACATGGGGTTACACATTTGCAGATAAAACCATTTCAATGTCACATTTGCATGAAGCAGCTAACCCGCCGCTCGCGACTCAGGATGCACTTGAGAGCACATGAGGAGGAACTGTCTCCAACTCTTGTGCTGGTCTGTGCTGTCTGCAACAGGGCTTTTAGGGACCAACAGGATGCACAGGAGCACGCAACAAAATCAATGGAGTGTATAGAAGTTTTCGCCAACGAGCTCAAGGAGGAGGAGGAGCAAGATCCAACAGTCTTATTGTCACCCACCAGTGGACTTGTCAGAACCACTGTCAAGATTGTTGAATCTGCCCGCCTCAGCAGGCCAGTTGACCGTCAAGTGGACGACCAATTAGCGGAGCAACTGCTGTCTCAAATCGCAGATGAAGCCAGGAGCATCATACGGGTCGTAGAAATTGAAAAGGCATTCCGTTGCGAATATTGCGAGGATGTTTTCTACTTAGAAGACGGATTGAACACGCACAGAGTGATACACAAAGGTGTCAAGAATCCTTTCACGTGCCACATTTGTAAAGTCAGCTTTGCTACATATTCTAGATGCACAACACACAAAACAACGCACGGTTTCTATAAAAGGTCGTTAGCGGACGCAAAGAAACAAACGGACAAACAGGGGGCTTCTTCTGCGGGGATATTAGGTTATGGTGGATTTCCGGTCGTGAAGCACTTCCTCTGTGAGGACTGCGGTCGTTCATACCTGCACTGGACATACTTGCAAGTGCACAGACGTATGAAACACGCCAATGAAAATTTCTTGTACAAATGCAATAACTGTGAACTCACTTTTCCTAACAGTTGGAGCGTGACTTATCACAGAAAAAAAGTGCACGGCAATTTAATGGAAAACTGTGGCTCTACGAAAATCGCCAAGGATGATTACAGGATTCCATGCCGGGATTGCGATGAGGTATTGCCAAACAAAACTGCGCTCTATAAGCATAGAAAGAAGGAACACAGTGATTTGTCGTTGAGAATCAACAGTGAAAATGAAAGTGTATGGTCAGACAATAAGCTGTATCACACGGCCCACGCGGGCTACACGGCCCACGTGGGCCAAACGGCCTCAGCGTTGACTATAGCCGCTACGAATGCGACTTGCAACAAATGCGGACAAAGCTTTATTGACATGGAGTCTTTGGAGGCGCATTTCAAGGAAGTACATATAAACGAAGCGCAAATATGCCTAATCTGCGACGCATATTTCTCAACCCGCGCGGAGTTGCAAACACACGCGCGTACGCATTCGCAGCGTCCGCACGCGTGCTCCGAGTGCGGCCACGCGTTCCGGACTGCGTCGATGCGGAATGAACACCTGCGCACACATACGGGGGAACGCCCGTATCCGTGTGACGTGTGCGGAGTTGCGTTTAGACGACCTCTTAGGGTCGGTTGGAACCAAGCGCAGAGCATACACGCACACGTTTCTAGTTGCGGGCTCCACACCGAGCGCAAAATCTTCGTGACTGCACGTGAATTCACAATAACATTTGTGAAGGATTGCGTGCTCGGGCAGTATCGAACGGGATGTGCGTTTCGATTGGGGGCCATACCTGGGAAATGTGAGGCTCCCAAGGGAACCTGGGTCGCTGAGATCTCGATGGAAGGCATAAACCCTAGTGAAGAGGAGGTGGTGCGACAACTAAGCATGAACAACATTCCGCTGCACAAAGTCATTGAGATCAGCAAGATATCCTTCACACAGGGCGCAAAAAGTATAGTACCGAATTCCGCCCGCGCACTTTCGTTGGTGGGAGTGCCGCGCACCCCGGTGGCCCTGGGTCGACCCGCGCCCCAAACAAATGGTAAATGTTTGTTATTTGTTGCTTTTGTTCGTCAGTACTGGTATCCTCTTTAA
- Protein Sequence
- MEESQPPLIMCMENATGEDVALQIEPEDNFQTFLDKAKSLLGFDIDINSITRNQPVSLEDNIYQFLVNAEQNPSDGTLSTFYPLLEPTDSKNDLVYILDDGTQIKASQIHFDNDDPPVDLTTEKLPFVQHANTTDDELEPEVADVQKINIIESPVSRWSSNSSPRCDFGNTLPFKVICNNTSGFEVQFTKYLEESTRSYVSNELSIREDYKSYDDDQNDRDFGAFTREEVLNMFKDSPVASLPYENQNFTERKHVRKTDPLRPVQKNWNYKPISYIDVDGTLIGQNESQDCCICGRFIENSLDKLYLFDNEDQRLHRLSPQKKLSTQLKILCQDCLEENFKPCFMKNPNQPLNTDEYLIIKNNQQYIYQRINDIHGFHVAKAVLEDIDSEVFKEIEFSKLQIAPDFEKIIGCIETDQKSNEVVLVKDEDSSDVEIIEEPEIDDIENLEEADEEVKEFLGKYKCDGEVKEMKCRFCNRVFSDLSEVVDHGEAHKHDTDDGEVFPCPLCYYGYANYKWLKGHLKAAHDKTENNTEEIKKEHNVSDEVKKEEDSDAKGSSPIARRTRSADKNKNNVDSQEEEKDLKPTKDNDNNTNKEAETKTVESTEATRLIKTEVKQECLDTSDEEAIWIVHTADDDSAEQLQSILCNKGTEKSQRDGYKKLTRCLNCSEICAEGASPHKCQRRGRKRKTIKGQMEICVPTEEDFIRRAQGRARRVEESNDNDLLVERTTKRKNKQPTSDPQIVTCHDCNESFTSKVRLKFHMQLHESTSMLSKDGKYTCTECEGSIFTTETELFDHVHFQHSKQRRWQCPVEDCGKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICMKQLTRRSRLRMHLRAHEEELSPTLVLVCAVCNRAFRDQQDAQEHATKSMECIEVFANELKEEEEQDPTVLLSPTSGLVRTTVKIVESARLSRPVDRQVDDQLAEQLLSQIADEARSIIRVVEIEKAFRCEYCEDVFYLEDGLNTHRVIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQTDKQGASSAGILGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNNCELTFPNSWSVTYHRKKVHGNLMENCGSTKIAKDDYRIPCRDCDEVLPNKTALYKHRKKEHSDLSLRINSENESVWSDNKLYHTAHAGYTAHVGQTASALTIAATNATCNKCGQSFIDMESLEAHFKEVHINEAQICLICDAYFSTRAELQTHARTHSQRPHACSECGHAFRTASMRNEHLRTHTGERPYPCDVCGVAFRRPLRVGWNQAQSIHAHVSSCGLHTERKIFVTAREFTITFVKDCVLGQYRTGCAFRLGAIPGKCEAPKGTWVAEISMEGINPSEEEVVRQLSMNNIPLHKVIEISKISFTQGAKSIVPNSARALSLVGVPRTPVALGRPAPQTNGKCLLFVAFVRQYWYPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -