Sbem014961.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000609.1:226203-234194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.069 4.7 8.2 0.2 6 21 197 212 193 213 0.94 2 11 0.0002 0.014 16.2 0.5 1 23 223 245 223 245 0.98 3 11 3.6e-06 0.00025 21.7 1.2 1 23 251 273 251 273 0.97 4 11 0.0027 0.18 12.7 0.1 3 23 282 303 280 303 0.92 5 11 0.0001 0.0069 17.2 3.6 1 23 309 331 309 331 0.99 6 11 0.00036 0.025 15.4 0.8 1 23 337 359 337 359 0.96 7 11 3.5e-05 0.0024 18.6 0.6 1 23 367 389 367 389 0.96 8 11 9.8e-05 0.0067 17.2 3.5 1 23 395 418 395 418 0.95 9 11 0.004 0.28 12.1 2.4 1 23 424 447 424 447 0.93 10 11 0.00029 0.02 15.7 5.3 1 23 480 502 480 502 0.97 11 11 0.00023 0.016 16.0 5.8 1 23 507 529 507 530 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAAATTTTGAATTTAAGCGGATTGTGTCGTTGCTGTCACGTAGACGGCGTGTACAAAAGTATATTTTCGGCGTATTTACACGAAAATGAAGTGGAAAGCTATTCTATTATGTTGCGTGACACTTTTGGTGTCTGTATTGGCCCACCGAGAACAGATCTTAGCAGCTCAATCTGTGATCAATGTATAAGTCAACTGCGCAATGCTTTTAGATTTAAGAAACAGGTGTTGAAGTGCGAAGACAAGTTTGAGGAGTATATTAAAAATGAGCAATTCCTCAATAATTGTACGGAAAATATAAAGATTGAAGATCCATCTCATAATGATAACAGCGATCTCGATGACAAAGATGACATTTATTTGCAGGATGATGTCAGTGATAACTTCCACAATACTTCTACTGAAGATATCAAAGAGGAAGatgacAAGCAAACTATAGATGAAGGGCTAAATAAAAGCAAAATCGAATCCAGTAACGATTCAAAGAGTCGAAAATTGAAAAGAGAAGCGACATCTACAAAACCTAAACCGCCTCCGGTCTACTCGGCGACGAAAGCTTGCCTTAATACAACAAATGGTCTTTTATGCAAAACTGTATATAAAGGAAAATATAGTTTACATCGTCATATTAGACTGAATAATGCATTAACCATTAAACCATCATATAAATGCAATTATTGTGAGAAAATTCTCGCAAATAACACGCTGTTGAGGGAACACGAGAACTCTCATACGCGCGAAATTATATATGAGTGTGACATCTGTCAAAAAAAGTTCGTTTACAAACAGAGCCTGAGGAAACACATTTCCTGGCATATGGGGAAAAGGAGGAGAATTATATGCGAAATATGCGGTTTGGCGTGTAACGATAGGACCAACTTGGGCAAACACGTGATGGCCGTCCACGAGAAGTTGAAGCCGTACACTTGCGAATTTTGCCCGAAAAAATACAGCGCCAAGAAGCATTTGACAGAACACGTTCGAAAGCATACGGGCGAAAGGCCGTATGCGTGCGATTTGTGTCCAAAAACATTCACGAATTCAACCGGACGGAAACAGCATAGGTTGTTACACGATAGATCGGATACAAATGGATACGCGTGTAAAATTTGCGATAAAACTTTCAACGAGAGGGGCGCTTTTCGAACGCATCTGTTCGTTCACGAAGGCGAGAAACCTTACAAATGCATGTATTGCGATAAAGATTTCTGCAAAGCGTTCACTTTGAAACGACATATAGCGCAGTTACACAACGGTTCTAAGGAGTTTACCTGTTTCATCTGCCAAAAGTTATTCTCTCAAAAATGCGTGCTGGAAAGGCATTTAGTTAATATACATAGTCCCACAATTGAAATAGTGAAAAAGAAGTGTCAAATTTGCAAAATAAACGTTAGGGATTTGGAGAAGCATGCGCAGATACACATAGAAAGGCCATTTCACTGCACCTTTTGTAGTAAAACTTATCCCACTAAAAGCTCTTTTAATCTACACATGAAACTGCACGACGGTCGTACTTTTAATTGTGAAATATGTAATAAATGCTACAGGAGTTCGTGGAGGTTAAAAGAGCACATGTCAAAGCACCATAAAGAACTGGGCATAGACAATGATGATAGGTCTTTTATGATACCGAAACATATTATTAAAAAGAAAAGGAAAAGGAGGATTTTAGAGAAATTAAGAGCAAAAACGGAtaatactagttttgtccgtgactccgtttgtgtggattataATGGCTCTTGA
- Protein Sequence
- MSEILNLSGLCRCCHVDGVYKSIFSAYLHENEVESYSIMLRDTFGVCIGPPRTDLSSSICDQCISQLRNAFRFKKQVLKCEDKFEEYIKNEQFLNNCTENIKIEDPSHNDNSDLDDKDDIYLQDDVSDNFHNTSTEDIKEEDDKQTIDEGLNKSKIESSNDSKSRKLKREATSTKPKPPPVYSATKACLNTTNGLLCKTVYKGKYSLHRHIRLNNALTIKPSYKCNYCEKILANNTLLREHENSHTREIIYECDICQKKFVYKQSLRKHISWHMGKRRRIICEICGLACNDRTNLGKHVMAVHEKLKPYTCEFCPKKYSAKKHLTEHVRKHTGERPYACDLCPKTFTNSTGRKQHRLLHDRSDTNGYACKICDKTFNERGAFRTHLFVHEGEKPYKCMYCDKDFCKAFTLKRHIAQLHNGSKEFTCFICQKLFSQKCVLERHLVNIHSPTIEIVKKKCQICKINVRDLEKHAQIHIERPFHCTFCSKTYPTKSSFNLHMKLHDGRTFNCEICNKCYRSSWRLKEHMSKHHKELGIDNDDRSFMIPKHIIKKKRKRRILEKLRAKTDNTSFVRDSVCVDYNGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -