Sbem014628.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000587.1:28475-43945[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0034 0.23 12.4 1.0 1 23 349 371 349 371 0.98 2 12 0.00046 0.031 15.1 0.4 1 23 378 401 378 401 0.96 3 12 5.3 3.7e+02 2.3 4.2 1 23 405 427 405 427 0.95 4 12 0.00072 0.05 14.5 3.8 1 23 432 455 432 455 0.98 5 12 0.054 3.7 8.6 1.6 1 23 459 482 459 482 0.95 6 12 7.7 5.3e+02 1.8 0.1 3 21 501 519 500 524 0.82 7 12 0.16 11 7.1 0.0 2 23 533 553 533 553 0.95 8 12 0.00011 0.0076 17.0 0.4 2 23 574 596 573 596 0.96 9 12 1.3e-05 0.00088 20.0 0.5 2 23 606 627 605 627 0.97 10 12 1.2e-06 8e-05 23.3 2.5 1 23 633 655 633 655 0.98 11 12 1.6e-06 0.00011 22.8 0.3 1 23 661 683 661 683 0.97 12 12 5.4e-06 0.00037 21.2 0.8 1 23 689 712 689 712 0.98
Sequence Information
- Coding Sequence
- ATGTCTGATTTGACTGTATGTAGGATGTGTTTAGTAGAAGATGTTTTCATGTACGAGATAGTGAATACCAAACTACAAGTATTTTATGAGAAATTAACAAATATTCTGTTGCAAACAGAAGACGGTAGACCCGTTAAAGCCTGCTACATATGTTACTATCAGTTGAAGAAATGCCTGAAATTTGTTGAGAAATCTATAAAGGCTAATGGTGTACTCTCACAGCTGTTGATGGGTGAAATAGAGAGGCCAACGTTGGTGGCGCTGGCCTGGGGAGTAGGCGAGCCAGCCACACTAGAGGTGTGGGTCACCACCAGGCTCTCCCTCACATCCATCTCCACCAGCCGGCTTGGTCACGGCATAGCCATTCACGGACCAGCATTCGGGACCCGCCGCTGGTGGCCCCATGCGACATATGCATGGTCGCGTGAATTACAGGGTCCAAGACTAGGAGCAATGTACAGAGAATTTCTGCTGCTAGAGCCACCTGGGGGATCGAGTTTGAAATGGGTTAATCCCCACCAGCCTCGAAACAAACCCGAGGGCTTGGATTTCCGTGGTGGCTGGCTTTCAGCCAAGATACAGAAGGCGGTGCTGCTCGTATCGTCCGTCGGTTTATCTCCCTGGGGTCCTGAACCCGGGCCGAATGTACCTCCGCCGGGGGGTATGGCGTCTCCCTCATTTTGGCTTACCCAGGGAGAAACGAGATGGTTTAAAACCAATACAATTACAATAATATCTGTGTTGCATCAAATAAAATCATCTCTTTCTTTCTTATTTATTTTAGACACAGAAATAATCACAGAAGATCCAGATCTCGGCAACGATTCTGATAATCAGCTTTTCCAATCGGATTCTGAGGATGACATTCCATTGAAAAATATTGTGAATAAAAAAAATGTTAATGCGAAGTCGAAGTCGCTTAATAAAGGGTACAAGGAAGGAAATGGTATAGGAGACTACGCCAGTGAAATAATACTGTCGAAGGAACAGCAATTGGAGGAGCTGAACGCTCGAGCGAAAAGTCTCAATTATCTTAATTCCCCGTATCAGTGTGATCTGTGTTACAAAGGGTTTGTCGACGCTAGAACCAACGAGAATCATAAACAGAAACACGATGAGCGCAGCGGTGCGTTTTCGTGCGATATTTGCCGCATGCGGTACCGCACCGCTCGGCAGCTGCGCTCACACGCCGCCACCGCTCACGAGCGACAGTACGCTTGTAGACATTGCGGTCATCGCTCACATACCGCGAATCAAGCGAGAGAACACGAGAAATGGCACAGAGGTTATACGTACGAATGTCAACTTTGCGGGCAAAAATTCAAAAAATCGACCTCGTATCTGACGCATAAACGCAAACGTCATCCCACCGAGCACGTGTGCAACATATGCGGTGATAGCTTCGTTGGCAGACACGGCCTACTCATGCATAAGAGTAAAACGCATCAGAGGGATTTCAAGCAAACGGACAATGTAAAGGGTCCACCCTCGGAGAGATTCTGCAACGAGTGCGATATACAATTCCTTACAATAAACGCTTGGAGATTACACATTCTCACTTCTATCAAACATACATTGCAGAATGAAAACAGTGCAGAATGCCCCATTTGCAAGACTAGTTACCCACCGGGGGCTGCTCGTAAACACTTGAGGGGGCACGCCAAGGAATTAAACGCAGTACGAACACCCCCTATAGGAATCAGGGAGCCGTCTTTGATACCCTGCGACCAGTGTAACGCCCGTTTCGTGAATCGATCCAAATTAAAAGCGCACGTAAAGAGAATGCATTTGGGTCTCAAATACAATAAAAATATTGTGTGCGAAGTGTGTGGGAAAAAGTGTGCGTCAAACGCGGCTTTAACGTATCACCAACGCACGCATACAGGCGAACGCCCGTATCCGTGCAGTTCATGTCACAAACGATTCGCGGACAATAACCAGCTCCGTATACACATGCGCACGCACACGGGCGAGCGGCCGTACGCGTGCGACGCGTGCGGGAAGCGGTTTAGCCAGAAACCGGCGCTGAACAGACATTATAGAGTCCATACGGGAGCGAAGCCATATGTATGCCAGTATTGTGCCAAGACATTCAGCCAATCGAGTTCAGTGAAATTGCACGTGAGAACGGTACATTTAAAACTACCCACAAATAGAAAAAATAAAATGCAAAATGTAACACAGGACACGGAAGCGGTTAAGGAAACTTTGTCATTACAAACTTTATGA
- Protein Sequence
- MSDLTVCRMCLVEDVFMYEIVNTKLQVFYEKLTNILLQTEDGRPVKACYICYYQLKKCLKFVEKSIKANGVLSQLLMGEIERPTLVALAWGVGEPATLEVWVTTRLSLTSISTSRLGHGIAIHGPAFGTRRWWPHATYAWSRELQGPRLGAMYREFLLLEPPGGSSLKWVNPHQPRNKPEGLDFRGGWLSAKIQKAVLLVSSVGLSPWGPEPGPNVPPPGGMASPSFWLTQGETRWFKTNTITIISVLHQIKSSLSFLFILDTEIITEDPDLGNDSDNQLFQSDSEDDIPLKNIVNKKNVNAKSKSLNKGYKEGNGIGDYASEIILSKEQQLEELNARAKSLNYLNSPYQCDLCYKGFVDARTNENHKQKHDERSGAFSCDICRMRYRTARQLRSHAATAHERQYACRHCGHRSHTANQAREHEKWHRGYTYECQLCGQKFKKSTSYLTHKRKRHPTEHVCNICGDSFVGRHGLLMHKSKTHQRDFKQTDNVKGPPSERFCNECDIQFLTINAWRLHILTSIKHTLQNENSAECPICKTSYPPGAARKHLRGHAKELNAVRTPPIGIREPSLIPCDQCNARFVNRSKLKAHVKRMHLGLKYNKNIVCEVCGKKCASNAALTYHQRTHTGERPYPCSSCHKRFADNNQLRIHMRTHTGERPYACDACGKRFSQKPALNRHYRVHTGAKPYVCQYCAKTFSQSSSVKLHVRTVHLKLPTNRKNKMQNVTQDTEAVKETLSLQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -