Sbem008644.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000297.1:744925-750760[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.46 32 5.6 1.6 1 23 117 140 117 140 0.96 2 19 0.66 46 5.1 0.2 2 23 167 188 166 188 0.96 3 19 4.6 3.2e+02 2.5 3.6 1 23 210 232 210 232 0.83 4 19 0.00073 0.05 14.4 0.1 1 22 236 257 236 259 0.90 5 19 0.032 2.2 9.3 0.3 1 23 264 287 264 287 0.94 6 19 0.014 0.98 10.4 1.9 2 23 295 317 294 317 0.96 7 19 0.00053 0.036 14.9 0.3 2 23 325 347 324 347 0.96 8 19 0.043 3 8.9 3.2 1 23 353 375 353 375 0.96 9 19 2e-06 0.00014 22.5 0.5 1 23 381 403 381 403 0.99 10 19 0.021 1.4 9.9 1.1 1 23 520 543 520 543 0.93 11 19 1.5 1e+02 4.0 0.2 2 23 570 592 569 592 0.94 12 19 0.026 1.8 9.6 0.4 2 23 615 636 614 636 0.96 13 19 0.39 27 5.9 0.2 1 23 640 662 640 662 0.92 14 19 0.088 6.1 7.9 2.1 1 23 667 690 667 690 0.95 15 19 0.22 15 6.7 1.1 2 23 698 720 697 720 0.88 16 19 7.9e-06 0.00054 20.6 1.5 2 23 728 750 728 750 0.97 17 19 0.024 1.7 9.7 2.4 1 23 756 778 756 778 0.97 18 19 1.1e-05 0.00073 20.2 1.3 1 23 784 806 784 806 0.99 19 19 0.00011 0.0074 17.1 4.3 1 23 812 835 812 835 0.98
Sequence Information
- Coding Sequence
- ATGCCAAAAACTGTGGGTCACGGCAGCGAAACCTGTATAATTATTGAGGTTTCCGAGGCAGATGTAAGTAGTAAATTAAGAACGAAAAACGTTAAATACGAACCTGAAAAATCTGAACAACCAAACAATTGGACTGTCACAATTGCCAAAAAAACTCCTTTAGAAACCAAAAAGACTGTACGTTTAGAAACTATAACGACGGAAAGTAATGAACGAGCAACGGTGAAACGTTTGCCTTCAGTAACTAAAAAATGTGTAAGGAACATCATGAATaagcatctcagtaatataagaacgattctattaaacaccaacgcgactccaataagaaaccaagtggccttaaattacgtatgctgcttttgtcttgcaagataccaaaagccagctgatttaaagcagcacactttaaaagaacacgacgataaacaaaagaaaacgtttatggaaggacagcctctagcatcttatgtggttaaattggatgtaacagagtctacttgtagaatttgcgaggtcactatagagaatcttgaagaaatgatgaagcacctcaccagtcacgggaaaaccatgcacttggatataaacaaccatatattgccatttaaatttgagggagaagagttcccttgcacgctttgctcgaagaggttcaactgtttcaagagaattagggaccatatgaacgcccattacaagaactatgaatgtaagagctgtggcgcggcgtttattaataaaacgactcttcaagcccattcgtcggcaatacataaagtgggtgaatttgcctgtttattctgcgagaagatattcgatacacgagtgaaggtgaaaaatcatgagagagctgttcatacaggtgaccacaggagatctaaatgttcgttttgtcctgaaagattctcggatcattaccaaaaattggagcacatggcgaaagaccatggaatgtcaagggaaccgataaaatgcacggcctgtgagaacatttacagcaatccggccatgttgaggcgacatatgagaagatatcatctgatggagaagtcgcatcattgtgacttgtgcgaatcgagatttttcaccaaagggggtttgttggagcacatgttgaaacatacaggagagaggaattatcagtgtgagatttgcttaaaggcttatggaaggaagagtactcttagagagcatatgaggattcatgaagatgatagaagattcaaatGTGTCCAACGTATACCTATCGTCAAAAGAGAAAGTAAAGAGACCAAGCCAGTACAAGTCAATTGGGGCGTCACTATCGTAAAAGTCGCATCCCAGAAGAAAGTTAAGAGCGAAAGGAGAAAGATTGATCCGGTAAAGATTGTAAAAGTTGCTGATTTTAATAAGACTAACTTAAGAGTTAAACCGAAGAGCATAGTAAAAATTGATGTGAAAAGAGATCCTGTTGACTCCATAAGAGGCGGTGAACTGAGCAAGCACAGAATTAATATAAGGATTATTCTACAGTgttctaatgcaacgccaatccgctgcagaggtggaataggttacgcgtgctgcttctgccccaatcaatacccgcaagcctcagatttaaagaaacacacaatacaagaccacgacgacaaagttaagagaaacttcatgaaaggaaaaatgatgaacgcttatttagtgaagctagacataacagatttaaagtgcaatttatgttatacggaaatcgatagtttagaaaaattgatagagcacctaataaaaacacacgagaagaagatctatactgatataaaaaatcatatacttccattcaaatttaacgatgatgttcttaaatgcgtgatgtgtgctaacatttacaacagattcaaagcgttacaagaacacatgaacactcattataggaactacatatgcgatgtctgtgattccggcttcgtcaacaggcacattctggccagccacacggaaggtcataagatcggaactttcaactgcgatttttgcccgaaaatcttcgacacctatcgaaagaagaagtcccacgagaagtctgttcacatccacgcgaacatgttgaacaaatgcgggtattgcaatgagaaatttaaggattataggaagaaagatgagcatttggcgaaggtgcacggagtgaggcatattgagccgaaatgcaaggcttgtgacaagaccttcacaaaccaaagtgctctgacgacgcacgtgaaaagagaccacttaatggaaaggaggcataaatgtcagctgtgtgatatgaagttttttgcgacgacggagttgagggaacacatggtgaagcacacgggggaaagagagtataggtgtgacgtgtgcttgaagtcatatggaaggaagaagaccttgagagagcacatgaggattcataagaacgataggaggttcaagtgtgagcactgcggccaggcgttcgtacagaaatgtagctggagagggcatatgcggtcgaagcatggagaattagtatag
- Protein Sequence
- MPKTVGHGSETCIIIEVSEADVSSKLRTKNVKYEPEKSEQPNNWTVTIAKKTPLETKKTVRLETITTESNERATVKRLPSVTKKCVRNIMNKHLSNIRTILLNTNATPIRNQVALNYVCCFCLARYQKPADLKQHTLKEHDDKQKKTFMEGQPLASYVVKLDVTESTCRICEVTIENLEEMMKHLTSHGKTMHLDINNHILPFKFEGEEFPCTLCSKRFNCFKRIRDHMNAHYKNYECKSCGAAFINKTTLQAHSSAIHKVGEFACLFCEKIFDTRVKVKNHERAVHTGDHRRSKCSFCPERFSDHYQKLEHMAKDHGMSREPIKCTACENIYSNPAMLRRHMRRYHLMEKSHHCDLCESRFFTKGGLLEHMLKHTGERNYQCEICLKAYGRKSTLREHMRIHEDDRRFKCVQRIPIVKRESKETKPVQVNWGVTIVKVASQKKVKSERRKIDPVKIVKVADFNKTNLRVKPKSIVKIDVKRDPVDSIRGGELSKHRINIRIILQCSNATPIRCRGGIGYACCFCPNQYPQASDLKKHTIQDHDDKVKRNFMKGKMMNAYLVKLDITDLKCNLCYTEIDSLEKLIEHLIKTHEKKIYTDIKNHILPFKFNDDVLKCVMCANIYNRFKALQEHMNTHYRNYICDVCDSGFVNRHILASHTEGHKIGTFNCDFCPKIFDTYRKKKSHEKSVHIHANMLNKCGYCNEKFKDYRKKDEHLAKVHGVRHIEPKCKACDKTFTNQSALTTHVKRDHLMERRHKCQLCDMKFFATTELREHMVKHTGEREYRCDVCLKSYGRKKTLREHMRIHKNDRRFKCEHCGQAFVQKCSWRGHMRSKHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -