Sbem008645.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000297.1:751175-756497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0087 0.6 11.1 0.7 1 23 81 104 81 104 0.94 2 18 9.5 6.5e+02 1.5 0.1 2 23 130 152 129 152 0.87 3 18 0.011 0.77 10.7 3.1 2 23 176 197 175 197 0.97 4 18 0.00088 0.061 14.2 0.5 1 23 201 223 201 223 0.97 5 18 0.0037 0.26 12.2 0.5 1 23 230 253 230 253 0.97 6 18 0.0015 0.1 13.5 1.3 2 23 261 283 260 283 0.95 7 18 1e-06 7e-05 23.4 1.2 2 23 289 311 288 311 0.97 8 18 1.2 85 4.3 1.0 1 23 317 340 317 340 0.89 9 18 0.0067 0.46 11.4 1.5 1 23 461 484 461 484 0.93 10 18 0.1 6.9 7.7 0.1 1 23 510 532 510 532 0.97 11 18 0.017 1.2 10.1 1.9 1 23 554 576 554 576 0.96 12 18 0.00022 0.015 16.1 0.5 1 23 580 602 580 602 0.96 13 18 0.00069 0.047 14.5 1.4 1 23 607 630 607 630 0.92 14 18 0.065 4.5 8.3 0.5 2 23 638 660 637 660 0.96 15 18 0.019 1.3 10.0 1.8 2 23 668 690 667 690 0.95 16 18 0.067 4.6 8.3 6.0 1 23 696 718 696 718 0.96 17 18 8.2e-06 0.00057 20.6 0.8 1 23 724 746 724 746 0.99 18 18 3.5e-05 0.0024 18.6 6.4 1 23 752 775 752 775 0.98
Sequence Information
- Coding Sequence
- ATGTTAAATGAAGAAGAGACAGCAAGTCACAAGATTGATTTTTCTTTTATAGGCGTTACGGGAGCGACAAAAAAACGAAGCAAACTACAAATTAAGGAAGAAAGGGAGGAAAATGAATCTCTGAGTAAGCTAGTTTTACGCGAAAAGCATATGCCAGAGATGAAGAAGCAGTGGCATAATCTCACAACCTTGTTGAAATATTCAAATGCAACTCCTTTCAAAGACAGGAATGATGCTGGATACATATGCGCTTACTGCTTTAAGACCTACCCGGATCCAGAAGTCCTAAGGTCGCACACGCACAATGACCATGTCAAAGAGAAGCCGACGTACAAAGCTGGATCAGGCATGAGCAGTTTCGTAGCCTTTCTTGATGTAGTCAATCTCAAATGCATCATATGCGACCAATCAATGGAGTCCTTAGGAACCTTAACGGAACATCTAGTCAACAATCATGAGAAGAAGTATTATTTAGGTGTTACAGACTACTTCCAGccgttcaagttaaccaatgagcagcagatccaatgctgtctatgcacagaagtgttccacaacatgaagcttctgatgcagcatatgaacgtacattaccggaattttatctgcacgacttgtggtgctggcttcgTGAATAGCTTCAGATTAAACCGCCATGAGACTACGCATGGGAAGAAGAAGTCGAGTTTCCCGTGCCGACATTGTGGACAAGTATTTGCTGCGGAGTCGAAGAAGAAAGCGCATGTCAATACAGAGCATAAGGGGATCGCCGGTGATAGCGTCTGTCAAATCTGCAAGGCGAGGTTCAAGAATTATTATCAGAAGACTCGGCATATGATGCAAGTGCATAACGTCGAGGGAATAAAGTGCGATAAATGTGATAAGAGGTTCAATTTGAAGTCCAATTTGATGCTTCACATGCGAAGTGTGCATTTGAAGGAACGACCATATGAGTGCTCTGTCTGCAGTATGGGATTTTTTATCAAAAGACATATGCTTGGACATTatatggctacgcatacgaatgagaggaagttcaaatgtgatgtatgtgGTAACGGCAGCGAAACCTGTCAAAATATTAAGGTTGAGGCAAATGTAAGTAGCAAATTAGCAATAGCAAAGATTAAGGAAGAACCAGTTGAGCGAGAAGCTCTGAGAGATTGGACCGTGACGATAACAAAGAAAACTCCGTTAGAGGCCAAGAGGACTGTACTTTATAAAAGTATGACGGGCGAAAATAAAACGGTGTCATTGAGACAAGTTCCTTTAATATATCAGAAAAGTAAAGTGAGTATCATGGataaacatctcaataacattagaactattttattaaataccaacgcgactccaataaggaatctggaaggtctaaattatgtatgccacttttgttccggtaaatacaagaaaccagcggaattgaaacgacacactttagatgaacacgacgacatgcaaaagaaaacgttcatgcaagggcaccctctgccgtcttacgttgttaaaatagatataacaggatttacatgtaaaatttgcaagagtcctatagaaaaccttgatgaaatgatgaagcacctcgccagccacgggaaaactattcacttggatataaacaaccatatattgccatttaaatttgagggcgaagagttcccttgcacagtttgctcaaagagattcaaatactttaagagaatcagagatcatatgagtgctcactacagaaactatgaatgcaagaactgcgacgccgcatttattaccaagaggacgctgcagtcgcattcggtgacacatatagttggcgaatttgcttgctcctattgcaacaaggtgtttgatactcgagtgaaaatgaggaatcacgagaagtttgtgcacacgggcgatccgaaaagaagcaagtgctcgttttgtccggaaaaattcacgggatacaatcaaaaaattgagcacatgattaaagtccacggaatggcacgagagactataaaatgcatggcttgcgagaagatttgcaacagtaaggctatgatgagtcgccatatgaggcgagatcatttgatggagaggccacatcattgcgacttatgtgagtcgaagttcttcaccaaaaggagtcttttgaatcacatgttgaaacatacaggagagagacattatcaatgtgacgtttgcttaaagtcttatggaaggaagaatactttgcgagagcatatgaggattcacgaggacgatagacgattcaaatgtgagcattgcggacagacatttgtccaaaaatgcagctggaagagtcatatgcgatcaaaacatggagagCTTGTCACATGA
- Protein Sequence
- MLNEEETASHKIDFSFIGVTGATKKRSKLQIKEEREENESLSKLVLREKHMPEMKKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPEVLRSHTHNDHVKEKPTYKAGSGMSSFVAFLDVVNLKCIICDQSMESLGTLTEHLVNNHEKKYYLGVTDYFQPFKLTNEQQIQCCLCTEVFHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDKCDKRFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGNGSETCQNIKVEANVSSKLAIAKIKEEPVEREALRDWTVTITKKTPLEAKRTVLYKSMTGENKTVSLRQVPLIYQKSKVSIMDKHLNNIRTILLNTNATPIRNLEGLNYVCHFCSGKYKKPAELKRHTLDEHDDMQKKTFMQGHPLPSYVVKIDITGFTCKICKSPIENLDEMMKHLASHGKTIHLDINNHILPFKFEGEEFPCTVCSKRFKYFKRIRDHMSAHYRNYECKNCDAAFITKRTLQSHSVTHIVGEFACSYCNKVFDTRVKMRNHEKFVHTGDPKRSKCSFCPEKFTGYNQKIEHMIKVHGMARETIKCMACEKICNSKAMMSRHMRRDHLMERPHHCDLCESKFFTKRSLLNHMLKHTGERHYQCDVCLKSYGRKNTLREHMRIHEDDRRFKCEHCGQTFVQKCSWKSHMRSKHGELVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -