Sbem009495.1
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- L
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000332.1:51450-56070[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.57 39 5.3 5.8 1 23 3 25 3 25 0.97 2 16 1.5e-06 0.00011 22.9 3.1 1 23 31 53 31 53 0.99 3 16 2.4e-05 0.0016 19.1 0.1 1 23 59 81 59 81 0.98 4 16 0.001 0.069 14.0 0.0 2 23 102 124 101 124 0.93 5 16 5.5 3.8e+02 2.3 0.1 9 23 155 170 151 170 0.93 6 16 0.28 19 6.3 0.0 3 23 222 242 221 242 0.97 7 16 0.013 0.93 10.5 0.1 2 23 256 277 255 277 0.89 8 16 0.00027 0.019 15.8 0.6 1 23 285 308 285 308 0.94 9 16 0.089 6.1 7.9 0.0 1 23 313 336 313 336 0.92 10 16 0.002 0.13 13.1 0.4 1 23 396 420 396 421 0.96 11 16 0.00018 0.012 16.4 0.1 2 23 481 502 480 502 0.96 12 16 0.053 3.6 8.6 0.0 1 23 510 532 510 532 0.98 13 16 1.7 1.2e+02 3.9 0.7 2 23 540 561 539 562 0.93 14 16 0.8 55 4.9 0.3 1 23 636 658 636 658 0.94 15 16 0.0032 0.22 12.4 0.1 1 20 666 685 666 688 0.95 16 16 0.093 6.4 7.8 0.3 1 23 695 717 695 717 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTCCGGTGCGAGTTCTGCTCGCGACTATTCAAGCACAAGCGTTCGCGCGACCGACATGTCAAGCTGCACACGGGCGATCGCAAGTATCGTTGCGCACACTGCGAAGCCGCATTCTCCAGGAGCGACCATCTAAAGATTCACATGAAGACCCACGACAACCAGAAGCCGTTCCAGTGTACTGTGTGTAATCGTGGGTATAACACTGCTGCGGCACTGACGTCACACATGCAGGGCCACAAACGTGACCGCGACCGTGATCCTCGTGATCCTCGCGACCTCGATCGCCGCAGATCGCTGCGTTGTTTGCGGTGTGGAGATGCGTTTCGACGACCCGATTTATTACAAGCTCACATGGCGAACGCACACGGCGTGGATGCAACAGCCACGACTCCGCCTCGCCGGGTGGCATCTCAACCGCCGCCCACTCTCCTTGCATGCATATACTGCACCAGAGACACTTTCACTAGCATGGAACAACTACAATTACACGTCCGGGCGGCACATTCAGCCTTATTAAATGGTGAAACACCGGAAATTGTAGATCAACCTGCGCCAACGGATCTGAGTCGTCGCGGTCCCGAGGAAACTCCGCCAATCAAACGCAGTCGCTCTGGCTCTGAAACTCCTCAAAGTGCACTCTCACCCAGCACGCTTCTATGCAATCAATGTGATGCAGCATTGCCCGATTTTGAAGCTTTTCGAGCTCACCTCAAAGGTCATTTGGAAGAAGGGGGAGAGTTAGGAAGAGGCAGTCCTACTCCGTGTCCACATTGTGGTGCTACGTTCACTGACGCCATTGCATCGGAGAGGCACCTTGCGGCTCATTACCTTGCGGTGTCATGTGAATACACTTGCCATAGTTGCGCTCGCTCCTTTTCAGCACCGGATGATCTACAAAAACATTTACTAGACTTGCACGCTCATCATCTATATCGTTGTGCTTTGTGTAAGGAAATCTTCGATTCGAAAGTTGCTATTCAGGTGCATTTCGCAGTAGCTCATAGCGGCGAAAGCAAGGTGTGGATATGTCGATCGTGCGGCGCGGGTGCGGGAGCGCTGCGCACCGAGGCAGAGGGCACGACACACGTGCGGGCTCGGCACGCGGCAGCGCGCTGCGCGTGCGGTGCCGTGTTGCCGGGAGCCCGTGCTCTCCGTGCGCACGCCGCTGCGCATCACGCCTATCGTTGTCCCGTACCAACCTGCACGGATACCTTCGCCGTGCAGTATCTACTGGAGCGACATATGCAGGCACACCATGCTCATCAGGGATTGAACGGCGAAGCACAACGGGTAAAGAGAGCCGAAAACAACAATACTGCTGACGGTCCAGAAAGTGCTTGCTCCCCTTGTGGTACGACAGGGGATGGAAGCATTACAGGAGTGCCACCACCTGCCGGAGAAGAGAGACGAAGAAAAAATGGGGCTGTGGCATTGCAGTGTGCATATTGCGGAGAGCGCACGCGAAGCCGTGCGGAGCTCGAAGCTCATACGCGTGCTCATTCAGGTGCCGCCGCTGCAAGACACAAGTGCCTCATCTGTGATGAAGTGCTACCCTCTGCTGCCGTACTTGCTGAACATAAACTTACTCATTGTAAGGTGATAGCCGGGGATACATGTGCGCGATGTCGTGCCCGGCTGCCGTCCGAGGAGTCGTTCCTGTCCCACATGGCGCGGCACCACCCCGCATTGCCCGCGCCCTGTGTCGTATGCCGGCAAACACTCGCCTCCGAGGCCGAGGCACGTTTACACGCTCGCTTCCATCTGCGGCCCACTGGAGACGAGCAGCGGTGTGCGATATGTCTCCGAGCCTTGACTGAAAGTGAAGCTGGAGAGGGGGCACGTGCATGCTCTGCATGCTACGCACGACATGCGGCGCCCCGTGCTCCTCCCCCCGCTGATCATGACTGCCGACTGTGTCGTCGCGCCCTCGGCTCCCCCACTCGCTTGCAAGCACACCTCATTGAACACACTTTCGCAGGCATCAATGCATTCACTTGTTATTTATGTTCGGCGGTATTCACAAGCGCAGCCGGACTCCAACGCCATCTGCCCGAGCACGCCGCTGCTCCGAGGCCGTACGACTGCGGTCGCTGCGGATTGAAGTTCTTCTTCCGCGCGGAGCTTGACAACCATGCGTTCGTCCATCTCGAGGAAGCGGAAATAGCTCAGAGAGCATTTTATGAGGCATATGCTAGAGGTGCAGCCTCGGCGTGGGCCGCGCTTGCGCCGCCTGAACCTTCGCAGCCGCCGGTCTCGACCCCGGCACCCGTTAGTATACCCGGAGTGCCGATAAAACAAGAACCCGAGATAAAGGAAGAGCGGAATACGGACGAGTACATAGAGGTGTCGTCCCCTCCCCGTCCCCCGCCCCCTCCGTCAGCGCACGCGTCCTCGCCGCCGCCCATAGTGAAGCAGGAGAAACCTGACGAAGACTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDRDPRDPRDLDRRRSLRCLRCGDAFRRPDLLQAHMANAHGVDATATTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPEIVDQPAPTDLSRRGPEETPPIKRSRSGSETPQSALSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRGSPTPCPHCGATFTDAIASERHLAAHYLAVSCEYTCHSCARSFSAPDDLQKHLLDLHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGESKVWICRSCGAGAGALRTEAEGTTHVRARHAAARCACGAVLPGARALRAHAAAHHAYRCPVPTCTDTFAVQYLLERHMQAHHAHQGLNGEAQRVKRAENNNTADGPESACSPCGTTGDGSITGVPPPAGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVIAGDTCARCRARLPSEESFLSHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPTGDEQRCAICLRALTESEAGEGARACSACYARHAAPRAPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGINAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPSQPPVSTPAPVSIPGVPIKQEPEIKEERNTDEYIEVSSPPRPPPPPSAHASSPPPIVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01388769;
- 80% Identity
- -