Sbem008620.2
Basic Information
- Insect
- Sesia bembeciformis
- Gene Symbol
- -
- Assembly
- GCA_943735985.1
- Location
- CALSEZ010000297.1:535447-539761[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.099 6.8 7.7 1.0 1 20 19 38 19 40 0.95 2 23 0.55 38 5.4 0.3 2 23 68 89 68 89 0.92 3 23 0.012 0.85 10.6 0.4 2 23 112 133 111 133 0.96 4 23 0.0057 0.39 11.7 0.1 1 23 137 159 137 159 0.95 5 23 0.062 4.2 8.4 0.4 1 14 164 177 164 187 0.78 6 23 0.0017 0.12 13.3 0.5 1 23 193 216 193 216 0.95 7 23 0.00098 0.067 14.0 2.3 1 23 223 246 223 246 0.97 8 23 3.9e-06 0.00027 21.6 0.7 3 23 255 275 253 275 0.97 9 23 0.00016 0.011 16.5 6.3 1 23 280 302 280 302 0.98 10 23 2.1 1.4e+02 3.6 0.1 2 12 306 316 305 320 0.87 11 23 0.00093 0.064 14.1 0.3 1 23 389 411 389 411 0.97 12 23 0.029 2 9.4 1.0 2 23 438 459 437 459 0.95 13 23 5.6e-05 0.0038 18.0 0.8 1 23 507 529 507 529 0.98 14 23 0.058 4 8.5 0.1 1 23 534 557 534 557 0.95 15 23 0.01 0.7 10.8 0.1 1 21 563 583 563 586 0.89 16 23 3.6 2.5e+02 2.8 2.3 1 13 593 605 593 607 0.88 17 23 0.45 31 5.7 0.7 1 23 655 677 655 677 0.95 18 23 0.064 4.4 8.3 1.1 2 21 703 722 702 724 0.93 19 23 0.012 0.85 10.6 1.8 1 23 746 768 746 768 0.99 20 23 0.0012 0.085 13.7 2.5 1 21 772 792 772 794 0.95 21 23 0.0035 0.24 12.3 0.2 1 23 799 822 799 822 0.95 22 23 0.13 9.1 7.4 2.9 1 23 828 851 828 851 0.96 23 23 3.6 2.5e+02 2.8 0.5 1 22 857 878 857 880 0.76
Sequence Information
- Coding Sequence
- ATGTGCCCTCATTTGTTGTCAGTTTACAACGACCCACGATGGAAGAAGAACAGATTCAAATGCGGTTACTGTGAAGACGAGTTCACAGACTGCACGTTATTGAGGAGTCACGTGACATTGTGCTCGAAACGTCACAGTGTGCGGGATATCTACAAAAAGTTCAAAGAGATGTCCCTGATTAACATCGACGTCACCGATGCAGTTTGCAGAAAATGCTTGAAACCCTTCATCAATGTGAACCAAATGAAAGACCACGTCGTTCAACACGGTTTGGAGTTGAACTTTGACCACCCAGACGGAGTGCTTCCCTTCTCCCTGAATAAAGAATCCTGGAGTTGTGTAATATGCCAGGAAAAATTTAATAACTTTTTGAAGCTATACGAACATATGAACATCCATTATCAACATTACATTTGCGCGATTTGCGGTAAAGGCTACATGACAGCTCCTCGCCTAAGAAAACATTCTGAAGTCCACGTGACGGGGTCTTTCCCCTGCAACGAATGTGGCAAGATCTTCAACATGAGAGCAGCCAGGGACTACCATAAGGCACACGCACACGCCAAAGGCCCGAGATACGAATGCCCTCAATGCAATATACGTTTCAACAATTACTACGACCGGATGACTCACCTGAACGAAGCTCACAGGGAGAAACAGGTGTCTTATAGTTGTTCTCACTGTGATATGTCATTCAAAACGAGTGGGAAACGTGCCATGCATTTGAAATCTGTTCATTTCCCTCCGAAACGCGATTTTGGCTGTCAATATTGCGACTGGAAGTTCCGAACTGCCTACGAATTAAGGAGGCATATGGTGAAGCATACTAGTCAAGACTTCCACTGTGAAGTATGCGGCAAGGGCTTTCACCGGCATAGGGCTCTGCGGCTTCATATGAAAACTCACGATAATTTAAACTGTAGATGGTGCGGCATGACGTTCAAGCAAGTCGGTTCCGTAGATTCCGAGAGAAAGTTAGAGGTTAGGCGTGGTAGGAAGTTGAAAGAAAACGTTAGCGAGAGACAAATGCGAAGGAGAAGACGCGCGAACAATGAACTTCCAGAAGAATCGGAGAAGAGAATAGCGAAAACGATGATGAGAAAGAACGCGATGACGCTTCTGGAGTGTTCTACCGCTTGGGCTTTTAGATGGTTTCACAACTCCTTTTATTGTTCGTATTGCGACGCGAGATTCGTCGATGTCGATCCTTTGCGAAACCACGTCAAAAATCACCTACACGAGCTACCCACTAAAAGAATATTCTCAAAGCTGACCGAAAACAACATggttaaaattgacatagccaatttaagttgcagactctgctaccacggcttcaatgacctagacagtctgaaagatcacttgcttctacacgggaggatggtaaatatgaagtacagtgatggggtcttaccattcaaattagaggccaacggcttcacttgccagaagtgtttcatgcctcatgacagttttgcaaaaattaacgagcatatgaacacccattatcagaactacatttgtgactcctgcgggaaggctttcgtgtctaaatctaggtttaggactcatgtgcagtctcatgaagtgggagcgtttccttgcggagaatgtgaggagattttcGAAACTCGGGCGTCCAGAATGGTACACAAATTGCGCGTCCATAAAAAAGGCGTTCGTTATGCCTGCCCTCGATGTCCCGAAGTGTTCACCACTTACTATGCCAGATCGAAGCATTTGGTTGATGGTCATGCCCAGCAAAGGAAGGAGTACGACTGCTCAGCTTGCGGAAAACGCTTCGAGACCAGCTGCTCGGAAGAGTCAGGGGACATGGCATCGACGTCGGAAATTAAAATCAAATGGAAAAGGAAGCGACGGATCGTTGAGGACAAAGAGAACGCTTCGATCATTCTTAAGTACTCCAACGCGGTTGTGTTTAGATGGCAGCGCGGGAAGTTTATGTGCGCGTACTGTCCGCAAATTTGCGCCAACGTTGGCCAAGTGAGGTCACACTCATTCACACACGTCAACAAATTGGCCGTCTTCGAGAATCCGAAAGTTCGGAACTCCTTCCCTCTACGAATAGATGTCACAGATCTCACTTGCAGCATTTGCAACCAAAGCGTATCCGCTTTGAAAGATTTAAAGGCACATCTGAAATGTCATCAGAAAGAAGTGAATCCAGACTACACAGATGGTGTAATACCTTTTATCTTGACAGGAAAGGAATACAGATGTGTGCACTGTAGTGTACGCTTCGAAGGCTTTATGAGTCTCTTTATACATATGAACATGCATTACCAGAGCTATATATGTCCAACTTGCGGAAAAGGGTACTCTGCAAAACATAAGTTGAGAGCTCATCAAATGTGCCACGAAAGCGGACAGTTTTCGTGTCCGAAATGCGACTCCGTTTTCTCGAATCGAATAGCAAAGAATCGAcatgtcggaaccgttcatgggccgaaggaacggtatcgatgtccgatttgtgatgaccatttcgattcctaccactctcgtttgcggcatctcgaTAGAATTCACGGACAGAAGGCGCAGTACCGATGCAACTTTTGCCCTTCGGTATTCGGTAGCGGAACGTTAAGGTACTCTCATGTGAAACTGGTTCATTTGAGGAAGAAGCATGTCTGA
- Protein Sequence
- MCPHLLSVYNDPRWKKNRFKCGYCEDEFTDCTLLRSHVTLCSKRHSVRDIYKKFKEMSLINIDVTDAVCRKCLKPFINVNQMKDHVVQHGLELNFDHPDGVLPFSLNKESWSCVICQEKFNNFLKLYEHMNIHYQHYICAICGKGYMTAPRLRKHSEVHVTGSFPCNECGKIFNMRAARDYHKAHAHAKGPRYECPQCNIRFNNYYDRMTHLNEAHREKQVSYSCSHCDMSFKTSGKRAMHLKSVHFPPKRDFGCQYCDWKFRTAYELRRHMVKHTSQDFHCEVCGKGFHRHRALRLHMKTHDNLNCRWCGMTFKQVGSVDSERKLEVRRGRKLKENVSERQMRRRRRANNELPEESEKRIAKTMMRKNAMTLLECSTAWAFRWFHNSFYCSYCDARFVDVDPLRNHVKNHLHELPTKRIFSKLTENNMVKIDIANLSCRLCYHGFNDLDSLKDHLLLHGRMVNMKYSDGVLPFKLEANGFTCQKCFMPHDSFAKINEHMNTHYQNYICDSCGKAFVSKSRFRTHVQSHEVGAFPCGECEEIFETRASRMVHKLRVHKKGVRYACPRCPEVFTTYYARSKHLVDGHAQQRKEYDCSACGKRFETSCSEESGDMASTSEIKIKWKRKRRIVEDKENASIILKYSNAVVFRWQRGKFMCAYCPQICANVGQVRSHSFTHVNKLAVFENPKVRNSFPLRIDVTDLTCSICNQSVSALKDLKAHLKCHQKEVNPDYTDGVIPFILTGKEYRCVHCSVRFEGFMSLFIHMNMHYQSYICPTCGKGYSAKHKLRAHQMCHESGQFSCPKCDSVFSNRIAKNRHVGTVHGPKERYRCPICDDHFDSYHSRLRHLDRIHGQKAQYRCNFCPSVFGSGTLRYSHVKLVHLRKKHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -